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Using ODIN for a PharmGKB revalidation experiment.
Rinaldi F, Clematide S, Garten Y, Whirl-Carrillo M, Gong L, Hebert JM, Sangkuhl K, Thorn CF, Klein TE, Altman RB. Rinaldi F, et al. Database (Oxford). 2012 Apr 23;2012:bas021. doi: 10.1093/database/bas021. Print 2012. Database (Oxford). 2012. PMID: 22529178 Free PMC article.
OntoGene in BioCreative II.
Rinaldi F, Kappeler T, Kaljurand K, Schneider G, Klenner M, Clematide S, Hess M, von Allmen JM, Parisot P, Romacker M, Vachon T. Rinaldi F, et al. Genome Biol. 2008;9 Suppl 2(Suppl 2):S13. doi: 10.1186/gb-2008-9-s2-s13. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834491 Free PMC article.
OntoGene in BioCreative II.5.
Rinaldi F, Schneider G, Kaljurand K, Clematide S, Vachon T, Romacker M. Rinaldi F, et al. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):472-80. doi: 10.1109/TCBB.2010.50. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20671319
BioCreative III interactive task: an overview.
Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH. Arighi CN, et al. Among authors: rinaldi f. BMC Bioinformatics. 2011 Oct 3;12 Suppl 8(Suppl 8):S4. doi: 10.1186/1471-2105-12-S8-S4. BMC Bioinformatics. 2011. PMID: 22151968 Free PMC article.
Using the OntoGene pipeline for the triage task of BioCreative 2012.
Rinaldi F, Clematide S, Hafner S, Schneider G, Grigonyte G, Romacker M, Vachon T. Rinaldi F, et al. Database (Oxford). 2013 Feb 9;2013:bas053. doi: 10.1093/database/bas053. Print 2013. Database (Oxford). 2013. PMID: 23396322 Free PMC article.
BioC: a minimalist approach to interoperability for biomedical text processing.
Comeau DC, Islamaj Doğan R, Ciccarese P, Cohen KB, Krallinger M, Leitner F, Lu Z, Peng Y, Rinaldi F, Torii M, Valencia A, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ. Comeau DC, et al. Among authors: rinaldi f. Database (Oxford). 2013 Sep 18;2013:bat064. doi: 10.1093/database/bat064. Print 2013. Database (Oxford). 2013. PMID: 24048470 Free PMC article.
Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12.
Gama-Castro S, Rinaldi F, López-Fuentes A, Balderas-Martínez YI, Clematide S, Ellendorff TR, Santos-Zavaleta A, Marques-Madeira H, Collado-Vides J. Gama-Castro S, et al. Among authors: rinaldi f. Database (Oxford). 2014 Jun 4;2014:bau049. doi: 10.1093/database/bau049. Print 2014. Database (Oxford). 2014. PMID: 24903516 Free PMC article.
552 results