Cuppen E - Search Results

1

Genetic basis of transcriptome differences between the founder strains of the rat HXB/BXH recombinant inbred panel.

Simonis M, Atanur SS, Linsen S, Guryev V, Ruzius FP, Game L, Lansu N, de Bruijn E, van Heesch S, Jones SJ, Pravenec M, Aitman TJ, Cuppen E. Simonis M, et al. Among authors: cuppen e. Genome Biol. 2012 Apr 27;13(4):r31. doi: 10.1186/gb-2012-13-4-r31. Genome Biol. 2012. PMID: 22541052 Free PMC article.

2

CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.

Berezikov E, Guryev V, Plasterk RH, Cuppen E. Berezikov E, et al. Among authors: cuppen e. Genome Res. 2004 Jan;14(1):170-8. doi: 10.1101/gr.1642804. Epub 2003 Dec 12. Genome Res. 2004. PMID: 14672977 Free PMC article.

3

Genetic variation in coding regions between and within commonly used inbred rat strains.

Smits BM, van Zutphen BF, Plasterk RH, Cuppen E. Smits BM, et al. Among authors: cuppen e. Genome Res. 2004 Jul;14(7):1285-90. doi: 10.1101/gr.2155004. Genome Res. 2004. PMID: 15231744 Free PMC article.

4

Single nucleotide polymorphisms associated with rat expressed sequences.

Guryev V, Berezikov E, Malik R, Plasterk RH, Cuppen E. Guryev V, et al. Among authors: cuppen e. Genome Res. 2004 Jul;14(7):1438-43. doi: 10.1101/gr.2154304. Genome Res. 2004. PMID: 15231757 Free PMC article.

5

CASCAD: a database of annotated candidate single nucleotide polymorphisms associated with expressed sequences.

Guryev V, Berezikov E, Cuppen E. Guryev V, et al. Among authors: cuppen e. BMC Genomics. 2005 Jan 27;6:10. doi: 10.1186/1471-2164-6-10. BMC Genomics. 2005. PMID: 15676075 Free PMC article.

6

Identification of a rat model for usher syndrome type 1B by N-ethyl-N-nitrosourea mutagenesis-driven forward genetics.

Smits BM, Peters TA, Mul JD, Croes HJ, Fransen JA, Beynon AJ, Guryev V, Plasterk RH, Cuppen E. Smits BM, et al. Among authors: cuppen e. Genetics. 2005 Aug;170(4):1887-96. doi: 10.1534/genetics.105.044222. Epub 2005 Jun 18. Genetics. 2005. PMID: 15965244 Free PMC article.

7

CONREAL web server: identification and visualization of conserved transcription factor binding sites.

Berezikov E, Guryev V, Cuppen E. Berezikov E, et al. Among authors: cuppen e. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W447-50. doi: 10.1093/nar/gki378. Nucleic Acids Res. 2005. PMID: 15980509 Free PMC article.

8

Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates.

Smits BM, Guryev V, Zeegers D, Wedekind D, Hedrich HJ, Cuppen E. Smits BM, et al. Among authors: cuppen e. BMC Genomics. 2005 Nov 29;6:170. doi: 10.1186/1471-2164-6-170. BMC Genomics. 2005. PMID: 16316463 Free PMC article.

9

Generation of gene knockouts and mutant models in the laboratory rat by ENU-driven target-selected mutagenesis.

Smits BM, Mudde JB, van de Belt J, Verheul M, Olivier J, Homberg J, Guryev V, Cools AR, Ellenbroek BA, Plasterk RH, Cuppen E. Smits BM, et al. Among authors: cuppen e. Pharmacogenet Genomics. 2006 Mar;16(3):159-69. doi: 10.1097/01.fpc.0000184960.82903.8f. Pharmacogenet Genomics. 2006. PMID: 16495775

10

Rats go genomic.

Smits BM, Cuppen E. Smits BM, et al. Among authors: cuppen e. Genome Biol. 2006;7(2):306. doi: 10.1186/gb-2006-7-2-306. Epub 2006 Feb 17. Genome Biol. 2006. PMID: 16522223 Free PMC article.

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