Dandekar T - Search Results

1

Robustness and accuracy of functional modules in integrated network analysis.

Beisser D, Brunkhorst S, Dandekar T, Klau GW, Dittrich MT, Müller T. Beisser D, et al. Among authors: dandekar t. Bioinformatics. 2012 Jul 15;28(14):1887-94. doi: 10.1093/bioinformatics/bts265. Epub 2012 May 11. Bioinformatics. 2012. PMID: 22581175

2

Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae.

Schuster S, Pfeiffer T, Moldenhauer F, Koch I, Dandekar T. Schuster S, et al. Among authors: dandekar t. Bioinformatics. 2002 Feb;18(2):351-61. doi: 10.1093/bioinformatics/18.2.351. Bioinformatics. 2002. PMID: 11847093

3

Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data.

Wolf M, Müller T, Dandekar T, Pollack JD. Wolf M, et al. Among authors: dandekar t. Int J Syst Evol Microbiol. 2004 May;54(Pt 3):871-875. doi: 10.1099/ijs.0.02868-0. Int J Syst Evol Microbiol. 2004. PMID: 15143038

4

Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta).

Müller T, Rahmann S, Dandekar T, Wolf M. Müller T, et al. Among authors: dandekar t. BMC Evol Biol. 2004 Jun 28;4:20. doi: 10.1186/1471-2148-4-20. BMC Evol Biol. 2004. PMID: 15222898 Free PMC article.

5

ProfDist: a tool for the construction of large phylogenetic trees based on profile distances.

Friedrich J, Dandekar T, Wolf M, Müller T. Friedrich J, et al. Among authors: dandekar t. Bioinformatics. 2005 May 1;21(9):2108-9. doi: 10.1093/bioinformatics/bti289. Epub 2005 Jan 27. Bioinformatics. 2005. PMID: 15677706

6

Current efforts in the analysis of RNAi and RNAi target genes.

Bengert P, Dandekar T. Bengert P, et al. Among authors: dandekar t. Brief Bioinform. 2005 Mar;6(1):72-85. doi: 10.1093/bib/6.1.72. Brief Bioinform. 2005. PMID: 15826358 Review.

7

YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities.

Schwarz R, Musch P, von Kamp A, Engels B, Schirmer H, Schuster S, Dandekar T. Schwarz R, et al. Among authors: dandekar t. BMC Bioinformatics. 2005 Jun 1;6:135. doi: 10.1186/1471-2105-6-135. BMC Bioinformatics. 2005. PMID: 15929789 Free PMC article.

8

CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures.

Wolf M, Friedrich J, Dandekar T, Müller T. Wolf M, et al. Among authors: dandekar t. In Silico Biol. 2005;5(3):291-4. Epub 2005 Mar 16. In Silico Biol. 2005. PMID: 15996120

9

Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures.

Wolf M, Achtziger M, Schultz J, Dandekar T, Müller T. Wolf M, et al. Among authors: dandekar t. RNA. 2005 Nov;11(11):1616-23. doi: 10.1261/rna.2144205. RNA. 2005. PMID: 16244129 Free PMC article.

10

Understanding platelets. Lessons from proteomics, genomics and promises from network analysis.

Dittrich M, Birschmann I, Stuhlfelder C, Sickmann A, Herterich S, Nieswandt B, Walter U, Dandekar T. Dittrich M, et al. Among authors: dandekar t. Thromb Haemost. 2005 Nov;94(5):916-25. doi: 10.1160/TH05-02-0121. Thromb Haemost. 2005. PMID: 16363231 Review.

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