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Page 1
Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape.
Bar KJ, Tsao CY, Iyer SS, Decker JM, Yang Y, Bonsignori M, Chen X, Hwang KK, Montefiori DC, Liao HX, Hraber P, Fischer W, Li H, Wang S, Sterrett S, Keele BF, Ganusov VV, Perelson AS, Korber BT, Georgiev I, McLellan JS, Pavlicek JW, Gao F, Haynes BF, Hahn BH, Kwong PD, Shaw GM. Bar KJ, et al. Among authors: pavlicek jw. PLoS Pathog. 2012;8(5):e1002721. doi: 10.1371/journal.ppat.1002721. Epub 2012 May 31. PLoS Pathog. 2012. PMID: 22693447 Free PMC article.
Impact of immune escape mutations on HIV-1 fitness in the context of the cognate transmitted/founder genome.
Song H, Pavlicek JW, Cai F, Bhattacharya T, Li H, Iyer SS, Bar KJ, Decker JM, Goonetilleke N, Liu MK, Berg A, Hora B, Drinker MS, Eudailey J, Pickeral J, Moody MA, Ferrari G, McMichael A, Perelson AS, Shaw GM, Hahn BH, Haynes BF, Gao F. Song H, et al. Among authors: pavlicek jw. Retrovirology. 2012 Oct 30;9:89. doi: 10.1186/1742-4690-9-89. Retrovirology. 2012. PMID: 23110705 Free PMC article.
Vertical T cell immunodominance and epitope entropy determine HIV-1 escape.
Liu MK, Hawkins N, Ritchie AJ, Ganusov VV, Whale V, Brackenridge S, Li H, Pavlicek JW, Cai F, Rose-Abrahams M, Treurnicht F, Hraber P, Riou C, Gray C, Ferrari G, Tanner R, Ping LH, Anderson JA, Swanstrom R; CHAVI Core B; Cohen M, Karim SS, Haynes B, Borrow P, Perelson AS, Shaw GM, Hahn BH, Williamson C, Korber BT, Gao F, Self S, McMichael A, Goonetilleke N. Liu MK, et al. Among authors: pavlicek jw. J Clin Invest. 2013 Jan;123(1):380-93. doi: 10.1172/JCI65330. Epub 2012 Dec 10. J Clin Invest. 2013. PMID: 23221345 Free PMC article.
Primary infection by a human immunodeficiency virus with atypical coreceptor tropism.
Jiang C, Parrish NF, Wilen CB, Li H, Chen Y, Pavlicek JW, Berg A, Lu X, Song H, Tilton JC, Pfaff JM, Henning EA, Decker JM, Moody MA, Drinker MS, Schutte R, Freel S, Tomaras GD, Nedellec R, Mosier DE, Haynes BF, Shaw GM, Hahn BH, Doms RW, Gao F. Jiang C, et al. Among authors: pavlicek jw. J Virol. 2011 Oct;85(20):10669-81. doi: 10.1128/JVI.05249-11. Epub 2011 Aug 10. J Virol. 2011. PMID: 21835785 Free PMC article.
Supercoiling-induced DNA bending.
Pavlicek JW, Oussatcheva EA, Sinden RR, Potaman VN, Sankey OF, Lyubchenko YL. Pavlicek JW, et al. Biochemistry. 2004 Aug 24;43(33):10664-8. doi: 10.1021/bi0362572. Biochemistry. 2004. PMID: 15311927