Han MV - Search Results

1

Disruption of the OsWRKY71 transcription factor gene results in early rice seed germination under normal and cold stress conditions.

Bataller S, Davis JA, Gu L, Baca S, Chen G, Majid A, Villacastin AJ, Barth D, Han MV, Rushton PJ, Shen QJ. Bataller S, et al. Among authors: han mv. BMC Plant Biol. 2024 Nov 18;24(1):1090. doi: 10.1186/s12870-024-05808-9. BMC Plant Biol. 2024. PMID: 39551730 Free PMC article.

2

Genome wide clustering on integrated chromatin states and Micro-C contacts reveals chromatin interaction signatures.

Sexton CE, Victor Paul S, Barth D, Han MV. Sexton CE, et al. Among authors: han mv. NAR Genom Bioinform. 2024 Oct 3;6(4):lqae136. doi: 10.1093/nargab/lqae136. eCollection 2024 Sep. NAR Genom Bioinform. 2024. PMID: 39363891 Free PMC article.

3

Supervised learning of enhancer-promoter specificity based on genome-wide perturbation studies highlights areas for improvement in learning.

Barth D, Van R, Cardwell J, Han MV. Barth D, et al. Among authors: han mv. Bioinformatics. 2024 Jun 3;40(6):btae367. doi: 10.1093/bioinformatics/btae367. Bioinformatics. 2024. PMID: 38870532 Free PMC article.

4

A comparison of RNA-Seq data preprocessing pipelines for transcriptomic predictions across independent studies.

Van R, Alvarez D, Mize T, Gannavarapu S, Chintham Reddy L, Nasoz F, Han MV. Van R, et al. Among authors: han mv. BMC Bioinformatics. 2024 May 8;25(1):181. doi: 10.1186/s12859-024-05801-x. BMC Bioinformatics. 2024. PMID: 38720247 Free PMC article.

5

Data supporting a saturation mutagenesis assay for Tat-driven transcription with the GigaAssay.

Benjamin R, Giacoletto CJ, FitzHugh ZT, Eames D, Buczek L, Wu X, Newsome J, Han MV, Pearson T, Wei Z, Banerjee A, Brown L, Valente LJ, Shen S, Deng HW, Schiller MR. Benjamin R, et al. Among authors: han mv. Data Brief. 2022 Sep 28;45:108641. doi: 10.1016/j.dib.2022.108641. eCollection 2022 Dec. Data Brief. 2022. PMID: 36426049 Free PMC article.

6

GigaAssay - An adaptable high-throughput saturation mutagenesis assay platform.

Benjamin R, Giacoletto CJ, FitzHugh ZT, Eames D, Buczek L, Wu X, Newsome J, Han MV, Pearson T, Wei Z, Banerjee A, Brown L, Valente LJ, Shen S, Deng HW, Schiller MR. Benjamin R, et al. Among authors: han mv. Genomics. 2022 Jul;114(4):110439. doi: 10.1016/j.ygeno.2022.110439. Epub 2022 Jul 26. Genomics. 2022. PMID: 35905834 Free PMC article.

7

The essential but enigmatic regulatory role of HERVH in pluripotency.

Sexton CE, Tillett RL, Han MV. Sexton CE, et al. Among authors: han mv. Trends Genet. 2022 Jan;38(1):12-21. doi: 10.1016/j.tig.2021.07.007. Epub 2021 Jul 30. Trends Genet. 2022. PMID: 34340871 Free PMC article. Review.

8

Machine learning approaches for the prediction of bone mineral density by using genomic and phenotypic data of 5130 older men.

Wu Q, Nasoz F, Jung J, Bhattarai B, Han MV, Greenes RA, Saag KG. Wu Q, et al. Among authors: han mv. Sci Rep. 2021 Feb 24;11(1):4482. doi: 10.1038/s41598-021-83828-3. Sci Rep. 2021. PMID: 33627720 Free PMC article.

9

Machine Learning Approaches for Fracture Risk Assessment: A Comparative Analysis of Genomic and Phenotypic Data in 5130 Older Men.

Wu Q, Nasoz F, Jung J, Bhattarai B, Han MV. Wu Q, et al. Among authors: han mv. Calcif Tissue Int. 2020 Oct;107(4):353-361. doi: 10.1007/s00223-020-00734-y. Epub 2020 Jul 29. Calcif Tissue Int. 2020. PMID: 32728911 Free PMC article.

10

Can Designer Indels Be Tailored by Gene Editing?: Can Indels Be Customized?

Trimidal SG, Benjamin R, Bae JE, Han MV, Kong E, Singer A, Williams TS, Yang B, Schiller MR. Trimidal SG, et al. Among authors: han mv. Bioessays. 2019 Dec;41(12):e1900126. doi: 10.1002/bies.201900126. Epub 2019 Nov 6. Bioessays. 2019. PMID: 31693213 Free PMC article.

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