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Megraft: a software package to graft ribosomal small subunit (16S/18S) fragments onto full-length sequences for accurate species richness and sequencing depth analysis in pyrosequencing-length metagenomes and similar environmental datasets.
Bengtsson J, Hartmann M, Unterseher M, Vaishampayan P, Abarenkov K, Durso L, Bik EM, Garey JR, Eriksson KM, Nilsson RH. Bengtsson J, et al. Among authors: eriksson km. Res Microbiol. 2012 Jul;163(6-7):407-12. doi: 10.1016/j.resmic.2012.07.001. Epub 2012 Jul 21. Res Microbiol. 2012. PMID: 22824070 Free article.
Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets.
Bengtsson J, Eriksson KM, Hartmann M, Wang Z, Shenoy BD, Grelet GA, Abarenkov K, Petri A, Rosenblad MA, Nilsson RH. Bengtsson J, et al. Among authors: eriksson km. Antonie Van Leeuwenhoek. 2011 Oct;100(3):471-5. doi: 10.1007/s10482-011-9598-6. Epub 2011 Jun 15. Antonie Van Leeuwenhoek. 2011. PMID: 21674231
Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker.
Bengtsson-Palme J, Richardson RT, Meola M, Wurzbacher C, Tremblay ÉD, Thorell K, Kanger K, Eriksson KM, Bilodeau GJ, Johnson RM, Hartmann M, Nilsson RH. Bengtsson-Palme J, et al. Among authors: eriksson km. Bioinformatics. 2018 Dec 1;34(23):4027-4033. doi: 10.1093/bioinformatics/bty482. Bioinformatics. 2018. PMID: 29912385 Free PMC article.
A comprehensive survey of integron-associated genes present in metagenomes.
Buongermino Pereira M, Österlund T, Eriksson KM, Backhaus T, Axelson-Fisk M, Kristiansson E. Buongermino Pereira M, et al. Among authors: eriksson km. BMC Genomics. 2020 Jul 20;21(1):495. doi: 10.1186/s12864-020-06830-5. BMC Genomics. 2020. PMID: 32689930 Free PMC article.
26 results