Liu JS - Search Results

1

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data.

Feng J, Meyer CA, Wang Q, Liu JS, Shirley Liu X, Zhang Y. Feng J, et al. Among authors: liu js. Bioinformatics. 2012 Nov 1;28(21):2782-8. doi: 10.1093/bioinformatics/bts515. Epub 2012 Aug 24. Bioinformatics. 2012. PMID: 22923299

2

Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes.

Jensen ST, Shen L, Liu JS. Jensen ST, et al. Among authors: liu js. Bioinformatics. 2005 Oct 15;21(20):3832-9. doi: 10.1093/bioinformatics/bti628. Epub 2005 Aug 16. Bioinformatics. 2005. PMID: 16105899

3

Gene expression profiling of human breast tissue samples using SAGE-Seq.

Wu ZJ, Meyer CA, Choudhury S, Shipitsin M, Maruyama R, Bessarabova M, Nikolskaya T, Sukumar S, Schwartzman A, Liu JS, Polyak K, Liu XS. Wu ZJ, et al. Among authors: liu js, liu xs. Genome Res. 2010 Dec;20(12):1730-9. doi: 10.1101/gr.108217.110. Epub 2010 Nov 2. Genome Res. 2010. PMID: 21045080 Free PMC article.

4

MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data.

Chen Y, Meyer CA, Liu T, Li W, Liu JS, Liu XS. Chen Y, et al. Among authors: liu js, liu xs, liu t. Genome Biol. 2011;12(2):R11. doi: 10.1186/gb-2011-12-2-r11. Epub 2011 Feb 1. Genome Biol. 2011. PMID: 21284836 Free PMC article.

5

Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq.

Hu M, Zhu Y, Taylor JM, Liu JS, Qin ZS. Hu M, et al. Among authors: liu js. Bioinformatics. 2012 Jan 1;28(1):63-8. doi: 10.1093/bioinformatics/btr616. Epub 2011 Nov 8. Bioinformatics. 2012. PMID: 22072384 Free PMC article.

6

dslice: an R package for nonparametric testing of associations with application in QTL and gene set analysis.

Ye C, Jiang B, Zhang X, Liu JS. Ye C, et al. Among authors: liu js. Bioinformatics. 2015 Jun 1;31(11):1842-4. doi: 10.1093/bioinformatics/btv021. Epub 2015 Jan 20. Bioinformatics. 2015. PMID: 25609796

7

Sequence determinants of improved CRISPR sgRNA design.

Xu H, Xiao T, Chen CH, Li W, Meyer CA, Wu Q, Wu D, Cong L, Zhang F, Liu JS, Brown M, Liu XS. Xu H, et al. Among authors: liu js, liu xs. Genome Res. 2015 Aug;25(8):1147-57. doi: 10.1101/gr.191452.115. Epub 2015 Jun 10. Genome Res. 2015. PMID: 26063738 Free PMC article.

8

High-dimensional genomic data bias correction and data integration using MANCIE.

Zang C, Wang T, Deng K, Li B, Hu S, Qin Q, Xiao T, Zhang S, Meyer CA, He HH, Brown M, Liu JS, Xie Y, Liu XS. Zang C, et al. Among authors: liu js, liu xs. Nat Commun. 2016 Apr 13;7:11305. doi: 10.1038/ncomms11305. Nat Commun. 2016. PMID: 27072482 Free PMC article.

9

Determinants of transcription factor regulatory range.

Chen CH, Zheng R, Tokheim C, Dong X, Fan J, Wan C, Tang Q, Brown M, Liu JS, Meyer CA, Liu XS. Chen CH, et al. Among authors: liu js, liu xs. Nat Commun. 2020 May 18;11(1):2472. doi: 10.1038/s41467-020-16106-x. Nat Commun. 2020. PMID: 32424124 Free PMC article.

10

A data-adaptive Bayesian regression approach for polygenic risk prediction.

Song S, Hou L, Liu JS. Song S, et al. Among authors: liu js. Bioinformatics. 2022 Mar 28;38(7):1938-1946. doi: 10.1093/bioinformatics/btac024. Bioinformatics. 2022. PMID: 35020805 Free PMC article.

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