Girardot C - Search Results

1

Analysis of variation at transcription factor binding sites in Drosophila and humans.

Spivakov M, Akhtar J, Kheradpour P, Beal K, Girardot C, Koscielny G, Herrero J, Kellis M, Furlong EE, Birney E. Spivakov M, et al. Among authors: girardot c. Genome Biol. 2012 Sep 28;13(9):R49. doi: 10.1186/gb-2012-13-9-r49. Genome Biol. 2012. PMID: 22950968 Free PMC article.

2

CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data.

Girardot C, Sklyar O, Grosz S, Huber W, Furlong EE. Girardot C, et al. Bioinformatics. 2007 Mar 15;23(6):771-3. doi: 10.1093/bioinformatics/btl641. Epub 2007 Jan 17. Bioinformatics. 2007. PMID: 17234641

3

A core transcriptional network for early mesoderm development in Drosophila melanogaster.

Sandmann T, Girardot C, Brehme M, Tongprasit W, Stolc V, Furlong EE. Sandmann T, et al. Among authors: girardot c. Genes Dev. 2007 Feb 15;21(4):436-49. doi: 10.1101/gad.1509007. Genes Dev. 2007. PMID: 17322403 Free PMC article.

4

4DXpress: a database for cross-species expression pattern comparisons.

Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T. Haudry Y, et al. Among authors: girardot c. Nucleic Acids Res. 2008 Jan;36(Database issue):D847-53. doi: 10.1093/nar/gkm797. Epub 2007 Oct 4. Nucleic Acids Res. 2008. PMID: 17916571 Free PMC article.

5

Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila.

Oktaba K, Gutiérrez L, Gagneur J, Girardot C, Sengupta AK, Furlong EE, Müller J. Oktaba K, et al. Among authors: girardot c. Dev Cell. 2008 Dec;15(6):877-89. doi: 10.1016/j.devcel.2008.10.005. Epub 2008 Nov 6. Dev Cell. 2008. PMID: 18993116 Free article.

6

Combinatorial binding predicts spatio-temporal cis-regulatory activity.

Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. Zinzen RP, et al. Among authors: girardot c. Nature. 2009 Nov 5;462(7269):65-70. doi: 10.1038/nature08531. Nature. 2009. PMID: 19890324

7

Model-based method for transcription factor target identification with limited data.

Honkela A, Girardot C, Gustafson EH, Liu YH, Furlong EE, Lawrence ND, Rattray M. Honkela A, et al. Among authors: girardot c. Proc Natl Acad Sci U S A. 2010 Apr 27;107(17):7793-8. doi: 10.1073/pnas.0914285107. Epub 2010 Apr 12. Proc Natl Acad Sci U S A. 2010. PMID: 20385836 Free PMC article.

8

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.

Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczyński B, Riddell A, Furlong EE. Bonn S, et al. Among authors: girardot c. Nat Genet. 2012 Jan 8;44(2):148-56. doi: 10.1038/ng.1064. Nat Genet. 2012. PMID: 22231485

9

A transcription factor collective defines cardiac cell fate and reflects lineage history.

Junion G, Spivakov M, Girardot C, Braun M, Gustafson EH, Birney E, Furlong EE. Junion G, et al. Among authors: girardot c. Cell. 2012 Feb 3;148(3):473-86. doi: 10.1016/j.cell.2012.01.030. Cell. 2012. PMID: 22304916 Free article.

10

Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity.

Erceg J, Saunders TE, Girardot C, Devos DP, Hufnagel L, Furlong EE. Erceg J, et al. Among authors: girardot c. PLoS Genet. 2014 Jan;10(1):e1004060. doi: 10.1371/journal.pgen.1004060. Epub 2014 Jan 2. PLoS Genet. 2014. PMID: 24391522 Free PMC article.

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