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Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.
Gascoigne DK, Cheetham SW, Cattenoz PB, Clark MB, Amaral PP, Taft RJ, Wilhelm D, Dinger ME, Mattick JS. Gascoigne DK, et al. Among authors: taft rj. Bioinformatics. 2012 Dec 1;28(23):3042-50. doi: 10.1093/bioinformatics/bts582. Epub 2012 Oct 7. Bioinformatics. 2012. PMID: 23044541
Non-coding RNAs: regulators of disease.
Taft RJ, Pang KC, Mercer TR, Dinger M, Mattick JS. Taft RJ, et al. J Pathol. 2010 Jan;220(2):126-39. doi: 10.1002/path.2638. J Pathol. 2010. PMID: 19882673 Review.
Dynamic isomiR regulation in Drosophila development.
Fernandez-Valverde SL, Taft RJ, Mattick JS. Fernandez-Valverde SL, et al. Among authors: taft rj. RNA. 2010 Oct;16(10):1881-8. doi: 10.1261/rna.2379610. Epub 2010 Aug 30. RNA. 2010. PMID: 20805289 Free PMC article.
The reality of pervasive transcription.
Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, Gingeras TR, Mattick JS. Clark MB, et al. Among authors: taft rj. PLoS Biol. 2011 Jul;9(7):e1000625; discussion e1001102. doi: 10.1371/journal.pbio.1000625. Epub 2011 Jul 12. PLoS Biol. 2011. PMID: 21765801 Free PMC article.
128 results