Shmulevich I - Search Results

1

Fastbreak: a tool for analysis and visualization of structural variations in genomic data.

Bressler R, Lin J, Eakin A, Robinson T, Kreisberg R, Rovira H, Knijnenburg T, Boyle J, Shmulevich I. Bressler R, et al. Among authors: shmulevich i. EURASIP J Bioinform Syst Biol. 2012 Oct 9;2012(1):15. doi: 10.1186/1687-4153-2012-15. EURASIP J Bioinform Syst Biol. 2012. PMID: 23046488 Free PMC article.

2

SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments.

Burdick DB, Cavnor CC, Handcock J, Killcoyne S, Lin J, Marzolf B, Ramsey SA, Rovira H, Bressler R, Shmulevich I, Boyle J. Burdick DB, et al. Among authors: shmulevich i. BMC Bioinformatics. 2010 Jul 14;11:377. doi: 10.1186/1471-2105-11-377. BMC Bioinformatics. 2010. PMID: 20630057 Free PMC article.

3

A regression model approach to enable cell morphology correction in high-throughput flow cytometry.

Knijnenburg TA, Roda O, Wan Y, Nolan GP, Aitchison JD, Shmulevich I. Knijnenburg TA, et al. Among authors: shmulevich i. Mol Syst Biol. 2011 Sep 27;7:531. doi: 10.1038/msb.2011.64. Mol Syst Biol. 2011. PMID: 21952134 Free PMC article.

4

EPEPT: a web service for enhanced P-value estimation in permutation tests.

Knijnenburg TA, Lin J, Rovira H, Boyle J, Shmulevich I. Knijnenburg TA, et al. Among authors: shmulevich i. BMC Bioinformatics. 2011 Oct 24;12:411. doi: 10.1186/1471-2105-12-411. BMC Bioinformatics. 2011. PMID: 22024252 Free PMC article.

5

Adaptable data management for systems biology investigations.

Boyle J, Rovira H, Cavnor C, Burdick D, Killcoyne S, Shmulevich I. Boyle J, et al. Among authors: shmulevich i. BMC Bioinformatics. 2009 Mar 6;10:79. doi: 10.1186/1471-2105-10-79. BMC Bioinformatics. 2009. PMID: 19265554 Free PMC article.

6

CloudForest: A Scalable and Efficient Random Forest Implementation for Biological Data.

Bressler R, Kreisberg RB, Bernard B, Niederhuber JE, Vockley JG, Shmulevich I, Knijnenburg TA. Bressler R, et al. Among authors: shmulevich i. PLoS One. 2015 Dec 17;10(12):e0144820. doi: 10.1371/journal.pone.0144820. eCollection 2015. PLoS One. 2015. PMID: 26679347 Free PMC article.

7

Systems biology driven software design for the research enterprise.

Boyle J, Cavnor C, Killcoyne S, Shmulevich I. Boyle J, et al. Among authors: shmulevich i. BMC Bioinformatics. 2008 Jun 25;9:295. doi: 10.1186/1471-2105-9-295. BMC Bioinformatics. 2008. PMID: 18578887 Free PMC article.

8

A multilevel pan-cancer map links gene mutations to cancer hallmarks.

Knijnenburg TA, Bismeijer T, Wessels LF, Shmulevich I. Knijnenburg TA, et al. Among authors: shmulevich i. Chin J Cancer. 2015 Sep 14;34(10):439-49. doi: 10.1186/s40880-015-0050-6. Chin J Cancer. 2015. PMID: 26369414 Free PMC article.

9

Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites.

Ramsey SA, Knijnenburg TA, Kennedy KA, Zak DE, Gilchrist M, Gold ES, Johnson CD, Lampano AE, Litvak V, Navarro G, Stolyar T, Aderem A, Shmulevich I. Ramsey SA, et al. Among authors: shmulevich i. Bioinformatics. 2010 Sep 1;26(17):2071-5. doi: 10.1093/bioinformatics/btq405. Epub 2010 Jul 27. Bioinformatics. 2010. PMID: 20663846 Free PMC article.

10

Combining dependent P-values with an empirical adaptation of Brown's method.

Poole W, Gibbs DL, Shmulevich I, Bernard B, Knijnenburg TA. Poole W, et al. Among authors: shmulevich i. Bioinformatics. 2016 Sep 1;32(17):i430-i436. doi: 10.1093/bioinformatics/btw438. Bioinformatics. 2016. PMID: 27587659 Free PMC article.

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