Huang SY - Search Results

1

A nonredundant structure dataset for benchmarking protein-RNA computational docking.

Huang SY, Zou X. Huang SY, et al. J Comput Chem. 2013 Feb 5;34(4):311-8. doi: 10.1002/jcc.23149. Epub 2012 Oct 10. J Comput Chem. 2013. PMID: 23047523 Free PMC article.

2

An iterative knowledge-based scoring function to predict protein-ligand interactions: II. Validation of the scoring function.

Huang SY, Zou X. Huang SY, et al. J Comput Chem. 2006 Nov 30;27(15):1876-82. doi: 10.1002/jcc.20505. J Comput Chem. 2006. PMID: 16983671

3

An iterative knowledge-based scoring function to predict protein-ligand interactions: I. Derivation of interaction potentials.

Huang SY, Zou X. Huang SY, et al. J Comput Chem. 2006 Nov 30;27(15):1866-75. doi: 10.1002/jcc.20504. J Comput Chem. 2006. PMID: 16983673

4

Similarities and differences between organic cation inhibition of the Na,K-ATPase and PMCA.

Gatto C, Helms JB, Prasse MC, Huang SY, Zou X, Arnett KL, Milanick MA. Gatto C, et al. Among authors: huang sy. Biochemistry. 2006 Nov 7;45(44):13331-45. doi: 10.1021/bi060667j. Biochemistry. 2006. PMID: 17073454

5

Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking.

Huang SY, Zou X. Huang SY, et al. Proteins. 2007 Feb 1;66(2):399-421. doi: 10.1002/prot.21214. Proteins. 2007. PMID: 17096427

6

Efficient molecular docking of NMR structures: application to HIV-1 protease.

Huang SY, Zou X. Huang SY, et al. Protein Sci. 2007 Jan;16(1):43-51. doi: 10.1110/ps.062501507. Epub 2006 Nov 22. Protein Sci. 2007. PMID: 17123961 Free PMC article.

7

An iterative knowledge-based scoring function for protein-protein recognition.

Huang SY, Zou X. Huang SY, et al. Proteins. 2008 Aug;72(2):557-79. doi: 10.1002/prot.21949. Proteins. 2008. PMID: 18247354

8

Interactions between PBEF and oxidative stress proteins--a potential new mechanism underlying PBEF in the pathogenesis of acute lung injury.

Zhang LQ, Adyshev DM, Singleton P, Li H, Cepeda J, Huang SY, Zou X, Verin AD, Tu J, Garcia JG, Ye SQ. Zhang LQ, et al. Among authors: huang sy. FEBS Lett. 2008 Jun 11;582(13):1802-8. doi: 10.1016/j.febslet.2008.04.061. Epub 2008 May 16. FEBS Lett. 2008. PMID: 18486613 Free PMC article.

9

Cutoff variation induces different topological properties: a new discovery of amino acid network within protein.

Yu T, Zou X, Huang SY, Zou XW. Yu T, et al. Among authors: huang sy. J Theor Biol. 2009 Feb 7;256(3):408-13. doi: 10.1016/j.jtbi.2008.09.042. Epub 2008 Nov 1. J Theor Biol. 2009. PMID: 19014959

10

Molecular modeling of the heterodimer of human CFTR's nucleotide-binding domains using a protein-protein docking approach.

Huang SY, Bolser D, Liu HY, Hwang TC, Zou X. Huang SY, et al. J Mol Graph Model. 2009 Apr;27(7):822-8. doi: 10.1016/j.jmgm.2008.12.005. Epub 2008 Dec 24. J Mol Graph Model. 2009. PMID: 19167254 Free PMC article.

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