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Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly.
Dutilh BE, Huynen MA, Strous M. Dutilh BE, et al. Bioinformatics. 2009 Nov 1;25(21):2878-81. doi: 10.1093/bioinformatics/btp377. Epub 2009 Jun 19. Bioinformatics. 2009. PMID: 19542148 Free PMC article.
MOTIVATION: Most microbial species can not be cultured in the laboratory. Metagenomic sequencing may still yield a complete genome if the sequenced community is enriched and the sequencing coverage is high. ...This indicates that the assembly becomes less dependent on the …
MOTIVATION: Most microbial species can not be cultured in the laboratory. Metagenomic sequencing may still yield a complete genome if …
FACIL: Fast and Accurate Genetic Code Inference and Logo.
Dutilh BE, Jurgelenaite R, Szklarczyk R, van Hijum SA, Harhangi HR, Schmid M, de Wild B, Françoijs KJ, Stunnenberg HG, Strous M, Jetten MS, Op den Camp HJ, Huynen MA. Dutilh BE, et al. Bioinformatics. 2011 Jul 15;27(14):1929-33. doi: 10.1093/bioinformatics/btr316. Epub 2011 Jun 8. Bioinformatics. 2011. PMID: 21653513 Free PMC article.
Genome sequence of the human pathogen Vibrio cholerae Amazonia.
Thompson CC, Marin MA, Dias GM, Dutilh BE, Edwards RA, Iida T, Thompson FL, Vicente AC. Thompson CC, et al. Among authors: dutilh be. J Bacteriol. 2011 Oct;193(20):5877-8. doi: 10.1128/JB.05643-11. J Bacteriol. 2011. PMID: 21952545 Free PMC article.
Metagenomics and future perspectives in virus discovery.
Mokili JL, Rohwer F, Dutilh BE. Mokili JL, et al. Among authors: dutilh be. Curr Opin Virol. 2012 Feb;2(1):63-77. doi: 10.1016/j.coviro.2011.12.004. Epub 2012 Jan 20. Curr Opin Virol. 2012. PMID: 22440968 Free PMC article. Review.
Combining de novo and reference-guided assembly with scaffold_builder.
Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Silva GG, et al. Among authors: dutilh be. Source Code Biol Med. 2013 Nov 22;8(1):23. doi: 10.1186/1751-0473-8-23. Source Code Biol Med. 2013. PMID: 24267787 Free PMC article.
176 results