Xie X - Search Results

1

Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation.

Yao C, Biesinger J, Wan J, Weng L, Xing Y, Xie X, Shi Y. Yao C, et al. Among authors: xie x. Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18773-8. doi: 10.1073/pnas.1211101109. Epub 2012 Oct 29. Proc Natl Acad Sci U S A. 2012. PMID: 23112178 Free PMC article.

2

Comparative genomics allows the discovery of cis-regulatory elements in mosquitoes.

Sieglaff DH, Dunn WA, Xie XS, Megy K, Marinotti O, James AA. Sieglaff DH, et al. Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3053-8. doi: 10.1073/pnas.0813264106. Epub 2009 Feb 11. Proc Natl Acad Sci U S A. 2009. PMID: 19211788 Free PMC article.

3

Genome-wide analysis of SREBP-1 binding in mouse liver chromatin reveals a preference for promoter proximal binding to a new motif.

Seo YK, Chong HK, Infante AM, Im SS, Xie X, Osborne TF. Seo YK, et al. Among authors: xie x. Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13765-9. doi: 10.1073/pnas.0904246106. Epub 2009 Aug 4. Proc Natl Acad Sci U S A. 2009. PMID: 19666523 Free PMC article.

4

Genome-wide localization of SREBP-2 in hepatic chromatin predicts a role in autophagy.

Seo YK, Jeon TI, Chong HK, Biesinger J, Xie X, Osborne TF. Seo YK, et al. Among authors: xie x. Cell Metab. 2011 Apr 6;13(4):367-375. doi: 10.1016/j.cmet.2011.03.005. Cell Metab. 2011. PMID: 21459322 Free PMC article.

5

SNP-based pathway enrichment analysis for genome-wide association studies.

Weng L, Macciardi F, Subramanian A, Guffanti G, Potkin SG, Yu Z, Xie X. Weng L, et al. Among authors: xie x. BMC Bioinformatics. 2011 Apr 15;12:99. doi: 10.1186/1471-2105-12-99. BMC Bioinformatics. 2011. PMID: 21496265 Free PMC article.

6

AREM: aligning short reads from ChIP-sequencing by expectation maximization.

Newkirk D, Biesinger J, Chon A, Yokomori K, Xie X. Newkirk D, et al. Among authors: xie x. J Comput Biol. 2011 Nov;18(11):1495-505. doi: 10.1089/cmb.2011.0185. Epub 2011 Oct 28. J Comput Biol. 2011. PMID: 22035330 Free PMC article.

7

Hobbes: optimized gram-based methods for efficient read alignment.

Ahmadi A, Behm A, Honnalli N, Li C, Weng L, Xie X. Ahmadi A, et al. Among authors: xie x. Nucleic Acids Res. 2012 Mar;40(6):e41. doi: 10.1093/nar/gkr1246. Epub 2011 Dec 22. Nucleic Acids Res. 2012. PMID: 22199254 Free PMC article.

8

Genome-wide analysis of hepatic LRH-1 reveals a promoter binding preference and suggests a role in regulating genes of lipid metabolism in concert with FXR.

Chong HK, Biesinger J, Seo YK, Xie X, Osborne TF. Chong HK, et al. Among authors: xie x. BMC Genomics. 2012 Feb 1;13:51. doi: 10.1186/1471-2164-13-51. BMC Genomics. 2012. PMID: 22296850 Free PMC article.

9

Discovering and mapping chromatin states using a tree hidden Markov model.

Biesinger J, Wang Y, Xie X. Biesinger J, et al. Among authors: xie x. BMC Bioinformatics. 2013;14 Suppl 5(Suppl 5):S4. doi: 10.1186/1471-2105-14-S5-S4. Epub 2013 Apr 10. BMC Bioinformatics. 2013. PMID: 23734743 Free PMC article.

10

Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system.

Blitz IL, Biesinger J, Xie X, Cho KW. Blitz IL, et al. Among authors: xie x. Genesis. 2013 Dec;51(12):827-34. doi: 10.1002/dvg.22719. Epub 2013 Nov 21. Genesis. 2013. PMID: 24123579 Free PMC article.

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