Kastritis PL - Search Results

1

On the binding affinity of macromolecular interactions: daring to ask why proteins interact.

Kastritis PL, Bonvin AM. Kastritis PL, et al. J R Soc Interface. 2012 Dec 12;10(79):20120835. doi: 10.1098/rsif.2012.0835. Print 2013 Feb. J R Soc Interface. 2012. PMID: 23235262 Free PMC article. Review.

2

Clustering biomolecular complexes by residue contacts similarity.

Rodrigues JP, Trellet M, Schmitz C, Kastritis P, Karaca E, Melquiond AS, Bonvin AM. Rodrigues JP, et al. Proteins. 2012 Jul;80(7):1810-7. doi: 10.1002/prot.24078. Epub 2012 May 8. Proteins. 2012. PMID: 22489062

3

Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server.

Karaca E, Melquiond AS, de Vries SJ, Kastritis PL, Bonvin AM. Karaca E, et al. Among authors: kastritis pl. Mol Cell Proteomics. 2010 Aug;9(8):1784-94. doi: 10.1074/mcp.M000051-MCP201. Epub 2010 Mar 19. Mol Cell Proteomics. 2010. PMID: 20305088 Free PMC article.

4

Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark.

Kastritis PL, Bonvin AM. Kastritis PL, et al. J Proteome Res. 2010 May 7;9(5):2216-25. doi: 10.1021/pr9009854. J Proteome Res. 2010. PMID: 20329755

5

A structure-based benchmark for protein-protein binding affinity.

Kastritis PL, Moal IH, Hwang H, Weng Z, Bates PA, Bonvin AM, Janin J. Kastritis PL, et al. Protein Sci. 2011 Mar;20(3):482-91. doi: 10.1002/pro.580. Epub 2011 Feb 16. Protein Sci. 2011. PMID: 21213247 Free PMC article.

6

Molecular origins of binding affinity: seeking the Archimedean point.

Kastritis PL, Bonvin AM. Kastritis PL, et al. Curr Opin Struct Biol. 2013 Dec;23(6):868-77. doi: 10.1016/j.sbi.2013.07.001. Epub 2013 Jul 19. Curr Opin Struct Biol. 2013. PMID: 23876790 Free article. Review.

7

HADDOCK(2P2I): a biophysical model for predicting the binding affinity of protein-protein interaction inhibitors.

Kastritis PL, Rodrigues JP, Bonvin AM. Kastritis PL, et al. J Chem Inf Model. 2014 Mar 24;54(3):826-36. doi: 10.1021/ci4005332. Epub 2014 Feb 27. J Chem Inf Model. 2014. PMID: 24521147 Free PMC article.

8

Proteins feel more than they see: fine-tuning of binding affinity by properties of the non-interacting surface.

Kastritis PL, Rodrigues JP, Folkers GE, Boelens R, Bonvin AM. Kastritis PL, et al. J Mol Biol. 2014 Jul 15;426(14):2632-52. doi: 10.1016/j.jmb.2014.04.017. Epub 2014 Apr 25. J Mol Biol. 2014. PMID: 24768922 Free article.

9

Non-interacting surface solvation and dynamics in protein-protein interactions.

Visscher KM, Kastritis PL, Bonvin AM. Visscher KM, et al. Among authors: kastritis pl. Proteins. 2015 Mar;83(3):445-58. doi: 10.1002/prot.24741. Epub 2015 Jan 21. Proteins. 2015. PMID: 25524313

10

PRODIGY: a web server for predicting the binding affinity of protein-protein complexes.

Xue LC, Rodrigues JP, Kastritis PL, Bonvin AM, Vangone A. Xue LC, et al. Among authors: kastritis pl. Bioinformatics. 2016 Dec 1;32(23):3676-3678. doi: 10.1093/bioinformatics/btw514. Epub 2016 Aug 8. Bioinformatics. 2016. PMID: 27503228

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