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Reference-assisted chromosome assembly.
Kim J, Larkin DM, Cai Q, Asan, Zhang Y, Ge RL, Auvil L, Capitanu B, Zhang G, Lewin HA, Ma J. Kim J, et al. Among authors: ma j. Proc Natl Acad Sci U S A. 2013 Jan 29;110(5):1785-90. doi: 10.1073/pnas.1220349110. Epub 2013 Jan 10. Proc Natl Acad Sci U S A. 2013. PMID: 23307812 Free PMC article.
The infinite sites model of genome evolution.
Ma J, Ratan A, Raney BJ, Suh BB, Miller W, Haussler D. Ma J, et al. Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14254-61. doi: 10.1073/pnas.0805217105. Epub 2008 Sep 11. Proc Natl Acad Sci U S A. 2008. PMID: 18787111 Free PMC article.
The yak genome and adaptation to life at high altitude.
Qiu Q, Zhang G, Ma T, Qian W, Wang J, Ye Z, Cao C, Hu Q, Kim J, Larkin DM, Auvil L, Capitanu B, Ma J, Lewin HA, Qian X, Lang Y, Zhou R, Wang L, Wang K, Xia J, Liao S, Pan S, Lu X, Hou H, Wang Y, Zang X, Yin Y, Ma H, Zhang J, Wang Z, Zhang Y, Zhang D, Yonezawa T, Hasegawa M, Zhong Y, Liu W, Zhang Y, Huang Z, Zhang S, Long R, Yang H, Wang J, Lenstra JA, Cooper DN, Wu Y, Wang J, Shi P, Wang J, Liu J. Qiu Q, et al. Among authors: ma t, ma j, ma h. Nat Genet. 2012 Jul 1;44(8):946-9. doi: 10.1038/ng.2343. Nat Genet. 2012. PMID: 22751099
Analyses of pig genomes provide insight into porcine demography and evolution.
Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, Ahn H, Aken BL, Anselmo A, Anthon C, Auvil L, Badaoui B, Beattie CW, Bendixen C, Berman D, Blecha F, Blomberg J, Bolund L, Bosse M, Botti S, Bujie Z, Bystrom M, Capitanu B, Carvalho-Silva D, Chardon P, Chen C, Cheng R, Choi SH, Chow W, Clark RC, Clee C, Crooijmans RP, Dawson HD, Dehais P, De Sapio F, Dibbits B, Drou N, Du ZQ, Eversole K, Fadista J, Fairley S, Faraut T, Faulkner GJ, Fowler KE, Fredholm M, Fritz E, Gilbert JG, Giuffra E, Gorodkin J, Griffin DK, Harrow JL, Hayward A, Howe K, Hu ZL, Humphray SJ, Hunt T, Hornshøj H, Jeon JT, Jern P, Jones M, Jurka J, Kanamori H, Kapetanovic R, Kim J, Kim JH, Kim KW, Kim TH, Larson G, Lee K, Lee KT, Leggett R, Lewin HA, Li Y, Liu W, Loveland JE, Lu Y, Lunney JK, Ma J, Madsen O, Mann K, Matthews L, McLaren S, Morozumi T, Murtaugh MP, Narayan J, Nguyen DT, Ni P, Oh SJ, Onteru S, Panitz F, Park EW, Park HS, Pascal G, Paudel Y, Perez-Enciso M, Ramirez-Gonzalez R, Reecy JM, Rodriguez-Zas S, Rohrer GA, Rund L, Sang Y, Schachtschneider K, Schraiber JG, Schwartz J, Scobie L… See abstract for full author list ➔ Groenen MA, et al. Among authors: ma j. Nature. 2012 Nov 15;491(7424):393-8. doi: 10.1038/nature11622. Nature. 2012. PMID: 23151582 Free PMC article.
TIGER: tiled iterative genome assembler.
Wu XL, Heo Y, El Hajj I, Hwu WM, Chen D, Ma J. Wu XL, et al. Among authors: ma j. BMC Bioinformatics. 2012;13 Suppl 19(Suppl 19):S18. doi: 10.1186/1471-2105-13-S19-S18. Epub 2012 Dec 19. BMC Bioinformatics. 2012. PMID: 23281792 Free PMC article.
Draft genome sequence of the Tibetan antelope.
Ge RL, Cai Q, Shen YY, San A, Ma L, Zhang Y, Yi X, Chen Y, Yang L, Huang Y, He R, Hui Y, Hao M, Li Y, Wang B, Ou X, Xu J, Zhang Y, Wu K, Geng C, Zhou W, Zhou T, Irwin DM, Yang Y, Ying L, Bao H, Kim J, Larkin DM, Ma J, Lewin HA, Xing J, Platt RN 2nd, Ray DA, Auvil L, Capitanu B, Zhang X, Zhang G, Murphy RW, Wang J, Zhang YP, Wang J. Ge RL, et al. Among authors: ma l, ma j. Nat Commun. 2013;4:1858. doi: 10.1038/ncomms2860. Nat Commun. 2013. PMID: 23673643 Free PMC article.
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