Henry C - Search Results

1

Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED.

Devoid S, Overbeek R, DeJongh M, Vonstein V, Best AA, Henry C. Devoid S, et al. Among authors: henry c. Methods Mol Biol. 2013;985:17-45. doi: 10.1007/978-1-62703-299-5_2. Methods Mol Biol. 2013. PMID: 23417797

2

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.

Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BØ. Feist AM, et al. Mol Syst Biol. 2007;3:121. doi: 10.1038/msb4100155. Epub 2007 Jun 26. Mol Syst Biol. 2007. PMID: 17593909 Free PMC article.

3

iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations.

Henry CS, Zinner JF, Cohoon MP, Stevens RL. Henry CS, et al. Genome Biol. 2009;10(6):R69. doi: 10.1186/gb-2009-10-6-r69. Epub 2009 Jun 25. Genome Biol. 2009. PMID: 19555510 Free PMC article.

4

Building the blueprint of life.

Henry C, Overbeek R, Stevens RL. Henry C, et al. Biotechnol J. 2010 Jul;5(7):695-704. doi: 10.1002/biot.201000076. Biotechnol J. 2010. PMID: 20665643 Review.

5

High-throughput generation, optimization and analysis of genome-scale metabolic models.

Henry CS, DeJongh M, Best AA, Frybarger PM, Linsay B, Stevens RL. Henry CS, et al. Nat Biotechnol. 2010 Sep;28(9):977-82. doi: 10.1038/nbt.1672. Epub 2010 Aug 29. Nat Biotechnol. 2010. PMID: 20802497

6

Connecting genotype to phenotype in the era of high-throughput sequencing.

Henry CS, Overbeek R, Xia F, Best AA, Glass E, Gilbert J, Larsen P, Edwards R, Disz T, Meyer F, Vonstein V, Dejongh M, Bartels D, Desai N, D'Souza M, Devoid S, Keegan KP, Olson R, Wilke A, Wilkening J, Stevens RL. Henry CS, et al. Biochim Biophys Acta. 2011 Oct;1810(10):967-77. doi: 10.1016/j.bbagen.2011.03.010. Epub 2011 Mar 21. Biochim Biophys Acta. 2011. PMID: 21421023 Review.

7

Frontiers in metabolic reconstruction and modeling of plant genomes.

Seaver SM, Henry CS, Hanson AD. Seaver SM, et al. J Exp Bot. 2012 Mar;63(6):2247-58. doi: 10.1093/jxb/err371. Epub 2012 Jan 11. J Exp Bot. 2012. PMID: 22238452 Review.

8

SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models.

Aziz RK, Devoid S, Disz T, Edwards RA, Henry CS, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Stevens RL, Vonstein V, Xia F. Aziz RK, et al. PLoS One. 2012;7(10):e48053. doi: 10.1371/journal.pone.0048053. Epub 2012 Oct 24. PLoS One. 2012. PMID: 23110173 Free PMC article.

9

Genome-scale bacterial transcriptional regulatory networks: reconstruction and integrated analysis with metabolic models.

Faria JP, Overbeek R, Xia F, Rocha M, Rocha I, Henry CS. Faria JP, et al. Brief Bioinform. 2014 Jul;15(4):592-611. doi: 10.1093/bib/bbs071. Brief Bioinform. 2014. PMID: 23422247

10

High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource.

Seaver SM, Gerdes S, Frelin O, Lerma-Ortiz C, Bradbury LM, Zallot R, Hasnain G, Niehaus TD, El Yacoubi B, Pasternak S, Olson R, Pusch G, Overbeek R, Stevens R, de Crécy-Lagard V, Ware D, Hanson AD, Henry CS. Seaver SM, et al. Among authors: henry cs. Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9645-50. doi: 10.1073/pnas.1401329111. Epub 2014 Jun 9. Proc Natl Acad Sci U S A. 2014. PMID: 24927599 Free PMC article.

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