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Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK.
McDonnell J, Dallman T, Atkin S, Turbitt DA, Connor TR, Grant KA, Thomson NR, Jenkins C. McDonnell J, et al. Among authors: thomson nr. Epidemiol Infect. 2013 Dec;141(12):2568-75. doi: 10.1017/S0950268813000137. Epub 2013 Feb 21. Epidemiol Infect. 2013. PMID: 23425681 Free PMC article.
Evidence for several waves of global transmission in the seventh cholera pandemic.
Mutreja A, Kim DW, Thomson NR, Connor TR, Lee JH, Kariuki S, Croucher NJ, Choi SY, Harris SR, Lebens M, Niyogi SK, Kim EJ, Ramamurthy T, Chun J, Wood JL, Clemens JD, Czerkinsky C, Nair GB, Holmgren J, Parkhill J, Dougan G. Mutreja A, et al. Among authors: thomson nr. Nature. 2011 Aug 24;477(7365):462-5. doi: 10.1038/nature10392. Nature. 2011. PMID: 21866102 Free PMC article.
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.
Holt KE, Baker S, Weill FX, Holmes EC, Kitchen A, Yu J, Sangal V, Brown DJ, Coia JE, Kim DW, Choi SY, Kim SH, da Silveira WD, Pickard DJ, Farrar JJ, Parkhill J, Dougan G, Thomson NR. Holt KE, et al. Among authors: thomson nr. Nat Genet. 2012 Sep;44(9):1056-9. doi: 10.1038/ng.2369. Epub 2012 Aug 5. Nat Genet. 2012. PMID: 22863732 Free PMC article.
Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms.
Dziva F, Hauser H, Connor TR, van Diemen PM, Prescott G, Langridge GC, Eckert S, Chaudhuri RR, Ewers C, Mellata M, Mukhopadhyay S, Curtiss R 3rd, Dougan G, Wieler LH, Thomson NR, Pickard DJ, Stevens MP. Dziva F, et al. Among authors: thomson nr. Infect Immun. 2013 Mar;81(3):838-49. doi: 10.1128/IAI.00585-12. Epub 2012 Dec 28. Infect Immun. 2013. PMID: 23275093 Free PMC article.
Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar.
Kingsley RA, Kay S, Connor T, Barquist L, Sait L, Holt KE, Sivaraman K, Wileman T, Goulding D, Clare S, Hale C, Seshasayee A, Harris S, Thomson NR, Gardner P, Rabsch W, Wigley P, Humphrey T, Parkhill J, Dougan G. Kingsley RA, et al. Among authors: thomson nr. mBio. 2013 Aug 27;4(5):e00565-13. doi: 10.1128/mBio.00565-13. mBio. 2013. PMID: 23982073 Free PMC article.
Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts.
Mather AE, Reid SW, Maskell DJ, Parkhill J, Fookes MC, Harris SR, Brown DJ, Coia JE, Mulvey MR, Gilmour MW, Petrovska L, de Pinna E, Kuroda M, Akiba M, Izumiya H, Connor TR, Suchard MA, Lemey P, Mellor DJ, Haydon DT, Thomson NR. Mather AE, et al. Among authors: thomson nr. Science. 2013 Sep 27;341(6153):1514-7. doi: 10.1126/science.1240578. Epub 2013 Sep 12. Science. 2013. PMID: 24030491 Free PMC article.
Use of whole-genus genome sequence data to develop a multilocus sequence typing tool that accurately identifies Yersinia isolates to the species and subspecies levels.
Hall M, Chattaway MA, Reuter S, Savin C, Strauch E, Carniel E, Connor T, Van Damme I, Rajakaruna L, Rajendram D, Jenkins C, Thomson NR, McNally A. Hall M, et al. Among authors: thomson nr. J Clin Microbiol. 2015 Jan;53(1):35-42. doi: 10.1128/JCM.02395-14. Epub 2014 Oct 22. J Clin Microbiol. 2015. PMID: 25339391 Free PMC article.
345 results