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Page 1
Galaxy LIMS for next-generation sequencing.
Scholtalbers J, Rößler J, Sorn P, de Graaf J, Boisguérin V, Castle J, Sahin U. Scholtalbers J, et al. Among authors: de graaf j. Bioinformatics. 2013 May 1;29(9):1233-4. doi: 10.1093/bioinformatics/btt115. Epub 2013 Mar 11. Bioinformatics. 2013. PMID: 23479349
Immunomic, genomic and transcriptomic characterization of CT26 colorectal carcinoma.
Castle JC, Loewer M, Boegel S, de Graaf J, Bender C, Tadmor AD, Boisguerin V, Bukur T, Sorn P, Paret C, Diken M, Kreiter S, Türeci Ö, Sahin U. Castle JC, et al. Among authors: de graaf j. BMC Genomics. 2014 Mar 13;15(1):190. doi: 10.1186/1471-2164-15-190. BMC Genomics. 2014. PMID: 24621249 Free PMC article.
Mutated tumor alleles are expressed according to their DNA frequency.
Castle JC, Loewer M, Boegel S, Tadmor AD, Boisguerin V, de Graaf J, Paret C, Diken M, Kreiter S, Türeci Ö, Sahin U. Castle JC, et al. Among authors: de graaf j. Sci Rep. 2014 Apr 22;4:4743. doi: 10.1038/srep04743. Sci Rep. 2014. PMID: 24752137 Free PMC article.
HLA typing from RNA-Seq sequence reads.
Boegel S, Löwer M, Schäfer M, Bukur T, de Graaf J, Boisguérin V, Türeci O, Diken M, Castle JC, Sahin U. Boegel S, et al. Among authors: de graaf j. Genome Med. 2012 Dec 22;4(12):102. doi: 10.1186/gm403. eCollection 2012. Genome Med. 2012. PMID: 23259685 Free PMC article.
Confidence-based somatic mutation evaluation and prioritization.
Löwer M, Renard BY, de Graaf J, Wagner M, Paret C, Kneip C, Türeci O, Diken M, Britten C, Kreiter S, Koslowski M, Castle JC, Sahin U. Löwer M, et al. Among authors: de graaf j. PLoS Comput Biol. 2012;8(9):e1002714. doi: 10.1371/journal.pcbi.1002714. Epub 2012 Sep 27. PLoS Comput Biol. 2012. PMID: 23028300 Free PMC article.
Exploiting the mutanome for tumor vaccination.
Castle JC, Kreiter S, Diekmann J, Löwer M, van de Roemer N, de Graaf J, Selmi A, Diken M, Boegel S, Paret C, Koslowski M, Kuhn AN, Britten CM, Huber C, Türeci O, Sahin U. Castle JC, et al. Among authors: de graaf j. Cancer Res. 2012 Mar 1;72(5):1081-91. doi: 10.1158/0008-5472.CAN-11-3722. Epub 2012 Jan 11. Cancer Res. 2012. PMID: 22237626 Free article.
Instruction of haematopoietic lineage choices, evolution of transcriptional landscapes and cancer stem cell hierarchies derived from an AML1-ETO mouse model.
Cabezas-Wallscheid N, Eichwald V, de Graaf J, Löwer M, Lehr HA, Kreft A, Eshkind L, Hildebrandt A, Abassi Y, Heck R, Dehof AK, Ohngemach S, Sprengel R, Wörtge S, Schmitt S, Lotz J, Meyer C, Kindler T, Zhang DE, Kaina B, Castle JC, Trumpp A, Sahin U, Bockamp E. Cabezas-Wallscheid N, et al. Among authors: de graaf j. EMBO Mol Med. 2013 Dec;5(12):1804-20. doi: 10.1002/emmm.201302661. Epub 2013 Oct 4. EMBO Mol Med. 2013. PMID: 24124051 Free PMC article.
Tick Salivary Sialostatin L Represses the Initiation of Immune Responses by Targeting IRF4-Dependent Transcription in Murine Mast Cells.
Klein M, Brühl TJ, Staudt V, Reuter S, Grebe N, Gerlitzki B, Hoffmann M, Bohn T, Ulges A, Stergiou N, de Graaf J, Löwer M, Taube C, Becker M, Hain T, Dietzen S, Stassen M, Huber M, Lohoff M, Campos Chagas A, Andersen J, Kotál J, Langhansová H, Kopecký J, Schild H, Kotsyfakis M, Schmitt E, Bopp T. Klein M, et al. Among authors: de graaf j. J Immunol. 2015 Jul 15;195(2):621-31. doi: 10.4049/jimmunol.1401823. Epub 2015 Jun 15. J Immunol. 2015. PMID: 26078269 Free PMC article.
Transcriptome Analysis Identifies Doublesex and Mab-3 Related Transcription Factor (DMRT3) in Nasal Polyp Epithelial Cells of Patients Suffering from Non-Steroidal Anti-Inflammatory Drug-Exacerbated Respiratory Disease (AERD).
Priyadharshini VS, Jiménez-Chobillon MA, de Graaf J, Porras Gutiérrez de Velasco R, Gratziou C, Ramírez-Jiménez F, Teran LM. Priyadharshini VS, et al. Among authors: de graaf j. Biomolecules. 2021 Jul 23;11(8):1092. doi: 10.3390/biom11081092. Biomolecules. 2021. PMID: 34439758 Free PMC article.
508 results