Vizcaíno JA - Search Results

1

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.

Mayer G, Montecchi-Palazzi L, Ovelleiro D, Jones AR, Binz PA, Deutsch EW, Chambers M, Kallhardt M, Levander F, Shofstahl J, Orchard S, Vizcaíno JA, Hermjakob H, Stephan C, Meyer HE, Eisenacher M; HUPO-PSI Group. Mayer G, et al. Among authors: vizcaino ja. Database (Oxford). 2013 Mar 12;2013:bat009. doi: 10.1093/database/bat009. Print 2013. Database (Oxford). 2013. PMID: 23482073 Free PMC article.

2

The PSI formal document process and its implementation on the PSI website.

Vizcaíno JA, Martens L, Hermjakob H, Julian RK, Paton NW. Vizcaíno JA, et al. Proteomics. 2007 Jul;7(14):2355-7. doi: 10.1002/pmic.200700064. Proteomics. 2007. PMID: 17570517

3

High Performance Proteomics: 7th HUPO Brain Proteome Project Workshop March 7-9, 2007 Wellcome Trust Conference Centre, Hinxton, UK.

Hamacher M, Stephan C, Eisenacher M, Lewczuk P, Wiltfang J, Martens L, Vizcaíno JA, Kwon KH, Yoo JS, Park YM, Beckers J, Horsch M, de Angelis MH, Cho ZH, Apweiler R, Meyer HE. Hamacher M, et al. Among authors: vizcaino ja. Proteomics. 2007 Aug;7(15):2490-6. doi: 10.1002/pmic.200700449. Proteomics. 2007. PMID: 17610211

4

Analyzing large-scale proteomics projects with latent semantic indexing.

Klie S, Martens L, Vizcaíno JA, Côté R, Jones P, Apweiler R, Hinneburg A, Hermjakob H. Klie S, et al. Among authors: vizcaino ja. J Proteome Res. 2008 Jan;7(1):182-91. doi: 10.1021/pr070461k. Epub 2007 Nov 30. J Proteome Res. 2008. PMID: 18047271

5

Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets.

Mueller M, Vizcaíno JA, Jones P, Côté R, Thorneycroft D, Apweiler R, Hermjakob H, Martens L. Mueller M, et al. Among authors: vizcaino ja. Proteomics. 2008 Mar;8(6):1138-48. doi: 10.1002/pmic.200700761. Proteomics. 2008. PMID: 18283668

6

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics.

Bell AW, Deutsch EW, Au CE, Kearney RE, Beavis R, Sechi S, Nilsson T, Bergeron JJ; HUPO Test Sample Working Group. Bell AW, et al. Nat Methods. 2009 Jun;6(6):423-30. doi: 10.1038/nmeth.1333. Nat Methods. 2009. PMID: 19448641 Free PMC article.

7

The Proteomics Identifications database: 2010 update.

Vizcaíno JA, Côté R, Reisinger F, Barsnes H, Foster JM, Rameseder J, Hermjakob H, Martens L. Vizcaíno JA, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D736-42. doi: 10.1093/nar/gkp964. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906717 Free PMC article.

8

The Ontology Lookup Service: bigger and better.

Côté R, Reisinger F, Martens L, Barsnes H, Vizcaino JA, Hermjakob H. Côté R, et al. Among authors: vizcaino ja. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W155-60. doi: 10.1093/nar/gkq331. Epub 2010 May 11. Nucleic Acids Res. 2010. PMID: 20460452 Free PMC article.

9

Organelle proteomics experimental designs and analysis.

Gatto L, Vizcaíno JA, Hermjakob H, Huber W, Lilley KS. Gatto L, et al. Among authors: vizcaino ja. Proteomics. 2010 Nov;10(22):3957-69. doi: 10.1002/pmic.201000244. Epub 2010 Nov 2. Proteomics. 2010. PMID: 21080489 Review.

10

Published and perished? The influence of the searched protein database on the long-term storage of proteomics data.

Griss J, Côté RG, Gerner C, Hermjakob H, Vizcaíno JA. Griss J, et al. Among authors: vizcaino ja. Mol Cell Proteomics. 2011 Sep;10(9):M111.008490. doi: 10.1074/mcp.M111.008490. Epub 2011 Jun 23. Mol Cell Proteomics. 2011. PMID: 21700957 Free PMC article.

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