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Page 1
The genomic and transcriptomic landscape of a HeLa cell line.
Landry JJ, Pyl PT, Rausch T, Zichner T, Tekkedil MM, Stütz AM, Jauch A, Aiyar RS, Pau G, Delhomme N, Gagneur J, Korbel JO, Huber W, Steinmetz LM. Landry JJ, et al. Among authors: gagneur j. G3 (Bethesda). 2013 Aug 7;3(8):1213-24. doi: 10.1534/g3.113.005777. G3 (Bethesda). 2013. PMID: 23550136 Free PMC article.
Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain.
Di Fraia D, Marino A, Lee JH, Kelmer Sacramento E, Baumgart M, Bagnoli S, Tomaz da Silva P, Kumar Sahu A, Siano G, Tiessen M, Terzibasi-Tozzini E, Gagneur J, Frydman J, Cellerino A, Ori A. Di Fraia D, et al. Among authors: gagneur j. bioRxiv [Preprint]. 2024 Jan 9:2023.07.20.549210. doi: 10.1101/2023.07.20.549210. bioRxiv. 2024. PMID: 38260253 Free PMC article. Preprint.
Aberrant splicing prediction across human tissues.
Wagner N, Çelik MH, Hölzlwimmer FR, Mertes C, Prokisch H, Yépez VA, Gagneur J. Wagner N, et al. Among authors: gagneur j. Nat Genet. 2023 May;55(5):861-870. doi: 10.1038/s41588-023-01373-3. Epub 2023 May 4. Nat Genet. 2023. PMID: 37142848
Diagnostic Odyssey in an Adult Patient with Ophthalmologic Abnormalities and Hearing Loss: Contribution of RNA-Seq to the Diagnosis of a PEX1 Deficiency.
Muñoz-Pujol G, Alforja-Castiella S, Casaroli-Marano R, Morales-Romero B, García-Villoria J, Yépez VA, Gagneur J, Gusic M, Prokisch H, Tort F, Ribes A. Muñoz-Pujol G, et al. Among authors: gagneur j. Int J Mol Sci. 2022 Oct 15;23(20):12367. doi: 10.3390/ijms232012367. Int J Mol Sci. 2022. PMID: 36293220 Free PMC article.
Modeling fragment counts improves single-cell ATAC-seq analysis.
Martens LD, Fischer DS, Yépez VA, Theis FJ, Gagneur J. Martens LD, et al. Among authors: gagneur j. Nat Methods. 2024 Jan;21(1):28-31. doi: 10.1038/s41592-023-02112-6. Epub 2023 Dec 4. Nat Methods. 2024. PMID: 38049697 Free PMC article.
Evaluation of input data modality choices on functional gene embeddings.
Brechtmann F, Bechtler T, Londhe S, Mertes C, Gagneur J. Brechtmann F, et al. Among authors: gagneur j. NAR Genom Bioinform. 2023 Nov 2;5(4):lqad095. doi: 10.1093/nargab/lqad095. eCollection 2023 Dec. NAR Genom Bioinform. 2023. PMID: 37942285 Free PMC article.
125 results