Haynes MR - Search Results

1

Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness.

Mokili JL, Dutilh BE, Lim YW, Schneider BS, Taylor T, Haynes MR, Metzgar D, Myers CA, Blair PJ, Nosrat B, Wolfe ND, Rohwer F. Mokili JL, et al. Among authors: haynes mr. PLoS One. 2013;8(3):e58404. doi: 10.1371/journal.pone.0058404. Epub 2013 Mar 15. PLoS One. 2013. PMID: 23554892 Free PMC article. Clinical Trial.

2

Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals.

Willner D, Furlan M, Haynes M, Schmieder R, Angly FE, Silva J, Tammadoni S, Nosrat B, Conrad D, Rohwer F. Willner D, et al. PLoS One. 2009 Oct 9;4(10):e7370. doi: 10.1371/journal.pone.0007370. PLoS One. 2009. PMID: 19816605 Free PMC article.

3

Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis.

Lim YW, Evangelista JS 3rd, Schmieder R, Bailey B, Haynes M, Furlan M, Maughan H, Edwards R, Rohwer F, Conrad D. Lim YW, et al. J Clin Microbiol. 2014 Feb;52(2):425-37. doi: 10.1128/JCM.02204-13. Epub 2013 Nov 20. J Clin Microbiol. 2014. PMID: 24478471 Free PMC article.

4

Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples.

Lim YW, Haynes M, Furlan M, Robertson CE, Harris JK, Rohwer F. Lim YW, et al. J Vis Exp. 2014 Dec 22;(94):52117. doi: 10.3791/52117. J Vis Exp. 2014. PMID: 25549184 Free PMC article.

5

Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity.

Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, Angly FE, McDole T, Mariella RP Jr, Rohwer F, Haynes M. Willner D, et al. Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4547-53. doi: 10.1073/pnas.1000089107. Epub 2010 Jun 14. Proc Natl Acad Sci U S A. 2011. PMID: 20547834 Free PMC article.

6

Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data.

Lim YW, Schmieder R, Haynes M, Furlan M, Matthews TD, Whiteson K, Poole SJ, Hayes CS, Low DA, Maughan H, Edwards R, Conrad D, Rohwer F. Lim YW, et al. PLoS One. 2013 May 30;8(5):e64285. doi: 10.1371/journal.pone.0064285. Print 2013. PLoS One. 2013. PMID: 23737977 Free PMC article.

7

Species-specific viromes in the ancestral holobiont Hydra.

Grasis JA, Lachnit T, Anton-Erxleben F, Lim YW, Schmieder R, Fraune S, Franzenburg S, Insua S, Machado G, Haynes M, Little M, Kimble R, Rosenstiel P, Rohwer FL, Bosch TC. Grasis JA, et al. PLoS One. 2014 Oct 24;9(10):e109952. doi: 10.1371/journal.pone.0109952. eCollection 2014. PLoS One. 2014. PMID: 25343582 Free PMC article.

8

Spatial distribution of microbial communities in the cystic fibrosis lung.

Willner D, Haynes MR, Furlan M, Schmieder R, Lim YW, Rainey PB, Rohwer F, Conrad D. Willner D, et al. Among authors: haynes mr. ISME J. 2012 Feb;6(2):471-4. doi: 10.1038/ismej.2011.104. Epub 2011 Jul 28. ISME J. 2012. PMID: 21796216 Free PMC article.

9

Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins.

Sanchez SE, Cuevas DA, Rostron JE, Liang TY, Pivaroff CG, Haynes MR, Nulton J, Felts B, Bailey BA, Salamon P, Edwards RA, Burgin AB, Segall AM, Rohwer F. Sanchez SE, et al. Among authors: haynes mr. J Vis Exp. 2015 Jun 11;(100):e52854. doi: 10.3791/52854. J Vis Exp. 2015. PMID: 26132888 Free PMC article.

10

Laboratory procedures to generate viral metagenomes.

Thurber RV, Haynes M, Breitbart M, Wegley L, Rohwer F. Thurber RV, et al. Nat Protoc. 2009;4(4):470-83. doi: 10.1038/nprot.2009.10. Nat Protoc. 2009. PMID: 19300441

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