Backofen R - Search Results

1

Semi-supervised prediction of SH2-peptide interactions from imbalanced high-throughput data.

Kundu K, Costa F, Huber M, Reth M, Backofen R. Kundu K, et al. Among authors: backofen r. PLoS One. 2013 May 17;8(5):e62732. doi: 10.1371/journal.pone.0062732. Print 2013. PLoS One. 2013. PMID: 23690949 Free PMC article.

2

The SH2-domain of SHIP1 interacts with the SHIP1 C-terminus: impact on SHIP1/Ig-α interaction.

Mukherjee O, Weingarten L, Padberg I, Pracht C, Sinha R, Hochdörfer T, Kuppig S, Backofen R, Reth M, Huber M. Mukherjee O, et al. Among authors: backofen r. Biochim Biophys Acta. 2012 Feb;1823(2):206-14. doi: 10.1016/j.bbamcr.2011.11.019. Epub 2011 Dec 13. Biochim Biophys Acta. 2012. PMID: 22182704 Free article.

3

GraphClust: alignment-free structural clustering of local RNA secondary structures.

Heyne S, Costa F, Rose D, Backofen R. Heyne S, et al. Among authors: backofen r. Bioinformatics. 2012 Jun 15;28(12):i224-32. doi: 10.1093/bioinformatics/bts224. Bioinformatics. 2012. PMID: 22689765 Free PMC article.

4

A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domains.

Kundu K, Costa F, Backofen R. Kundu K, et al. Among authors: backofen r. Bioinformatics. 2013 Jul 1;29(13):i335-43. doi: 10.1093/bioinformatics/btt220. Bioinformatics. 2013. PMID: 23813002 Free PMC article.

5

GraphProt: modeling binding preferences of RNA-binding proteins.

Maticzka D, Lange SJ, Costa F, Backofen R. Maticzka D, et al. Among authors: backofen r. Genome Biol. 2014 Jan 22;15(1):R17. doi: 10.1186/gb-2014-15-1-r17. Genome Biol. 2014. PMID: 24451197 Free PMC article.

6

Cluster based prediction of PDZ-peptide interactions.

Kundu K, Backofen R. Kundu K, et al. Among authors: backofen r. BMC Genomics. 2014;15 Suppl 1(Suppl 1):S5. doi: 10.1186/1471-2164-15-S1-S5. Epub 2014 Jan 24. BMC Genomics. 2014. PMID: 24564547 Free PMC article.

7

Bioinformatics of prokaryotic RNAs.

Backofen R, Amman F, Costa F, Findeiß S, Richter AS, Stadler PF. Backofen R, et al. RNA Biol. 2014;11(5):470-83. doi: 10.4161/rna.28647. Epub 2014 Apr 2. RNA Biol. 2014. PMID: 24755880 Free PMC article. Review.

8

MoDPepInt: an interactive web server for prediction of modular domain-peptide interactions.

Kundu K, Mann M, Costa F, Backofen R. Kundu K, et al. Among authors: backofen r. Bioinformatics. 2014 Sep 15;30(18):2668-9. doi: 10.1093/bioinformatics/btu350. Epub 2014 May 28. Bioinformatics. 2014. PMID: 24872426 Free PMC article.

9

BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.

Videm P, Rose D, Costa F, Backofen R. Videm P, et al. Among authors: backofen r. Bioinformatics. 2014 Jun 15;30(12):i274-82. doi: 10.1093/bioinformatics/btu270. Bioinformatics. 2014. PMID: 24931994 Free PMC article.

10

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci.

Alkhnbashi OS, Costa F, Shah SA, Garrett RA, Saunders SJ, Backofen R. Alkhnbashi OS, et al. Among authors: backofen r. Bioinformatics. 2014 Sep 1;30(17):i489-96. doi: 10.1093/bioinformatics/btu459. Bioinformatics. 2014. PMID: 25161238 Free PMC article.

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