Irie T - Search Results

1

BRIC-seq: a genome-wide approach for determining RNA stability in mammalian cells.

Imamachi N, Tani H, Mizutani R, Imamura K, Irie T, Suzuki Y, Akimitsu N. Imamachi N, et al. Among authors: irie t. Methods. 2014 May 1;67(1):55-63. doi: 10.1016/j.ymeth.2013.07.014. Epub 2013 Jul 17. Methods. 2014. PMID: 23872059

2

Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability.

Tani H, Imamachi N, Salam KA, Mizutani R, Ijiri K, Irie T, Yada T, Suzuki Y, Akimitsu N. Tani H, et al. Among authors: irie t. RNA Biol. 2012 Nov;9(11):1370-9. doi: 10.4161/rna.22360. Epub 2012 Oct 12. RNA Biol. 2012. PMID: 23064114 Free PMC article.

3

Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance.

Maekawa S, Imamachi N, Irie T, Tani H, Matsumoto K, Mizutani R, Imamura K, Kakeda M, Yada T, Sugano S, Suzuki Y, Akimitsu N. Maekawa S, et al. Among authors: irie t. BMC Genomics. 2015 Mar 6;16(1):154. doi: 10.1186/s12864-015-1358-y. BMC Genomics. 2015. PMID: 25879614 Free PMC article.

4

A new computational method to predict transcriptional activity of a DNA sequence from diverse datasets of massively parallel reporter assays.

Liu Y, Irie T, Yada T, Suzuki Y. Liu Y, et al. Among authors: irie t. Nucleic Acids Res. 2017 Jul 27;45(13):e124. doi: 10.1093/nar/gkx396. Nucleic Acids Res. 2017. PMID: 28531296 Free PMC article.

5

Predicting promoter activities of primary human DNA sequences.

Irie T, Park SJ, Yamashita R, Seki M, Yada T, Sugano S, Nakai K, Suzuki Y. Irie T, et al. Nucleic Acids Res. 2011 Jun;39(11):e75. doi: 10.1093/nar/gkr173. Epub 2011 Apr 12. Nucleic Acids Res. 2011. PMID: 21486745 Free PMC article.

6

Massive transcriptional start site analysis of human genes in hypoxia cells.

Tsuchihara K, Suzuki Y, Wakaguri H, Irie T, Tanimoto K, Hashimoto S, Matsushima K, Mizushima-Sugano J, Yamashita R, Nakai K, Bentley D, Esumi H, Sugano S. Tsuchihara K, et al. Among authors: irie t. Nucleic Acids Res. 2009 Apr;37(7):2249-63. doi: 10.1093/nar/gkp066. Epub 2009 Feb 22. Nucleic Acids Res. 2009. PMID: 19237398 Free PMC article.

7

Linear regression models predicting strength of transcriptional activity of promoters.

Yada T, Yoshida K, Morita M, Taniguchi T, Irie T, Suzuki Y. Yada T, et al. Among authors: irie t. Genome Inform. 2011;25(1):53-60. Genome Inform. 2011. PMID: 22230939 Free article.

8

Diverse DNA methylation statuses at alternative promoters of human genes in various tissues.

Cheong J, Yamada Y, Yamashita R, Irie T, Kanai A, Wakaguri H, Nakai K, Ito T, Saito I, Sugano S, Suzuki Y. Cheong J, et al. Among authors: irie t. DNA Res. 2006 Aug 31;13(4):155-67. doi: 10.1093/dnares/dsl008. Epub 2006 Oct 26. DNA Res. 2006. PMID: 17068070 Free article.

9

Intrinsic promoter activities of primary DNA sequences in the human genome.

Sakakibara Y, Irie T, Suzuki Y, Yamashita R, Wakaguri H, Kanai A, Chiba J, Takagi T, Mizushima-Sugano J, Hashimoto S, Nakai K, Sugano S. Sakakibara Y, et al. Among authors: irie t. DNA Res. 2007 Apr;14(2):71-7. doi: 10.1093/dnares/dsm006. Epub 2007 May 23. DNA Res. 2007. PMID: 17522093 Free PMC article.

10

Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes.

Tsuritani K, Irie T, Yamashita R, Sakakibara Y, Wakaguri H, Kanai A, Mizushima-Sugano J, Sugano S, Nakai K, Suzuki Y. Tsuritani K, et al. Among authors: irie t. Genome Res. 2007 Jul;17(7):1005-14. doi: 10.1101/gr.6030107. Epub 2007 Jun 13. Genome Res. 2007. PMID: 17567985 Free PMC article.

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