Daidone I - Search Results

1

Simulation of the amide I infrared spectrum in photoinduced peptide folding/unfolding transitions.

Zanetti-Polzi L, Aschi M, Amadei A, Daidone I. Zanetti-Polzi L, et al. Among authors: daidone i. J Phys Chem B. 2013 Oct 17;117(41):12383-90. doi: 10.1021/jp406708p. Epub 2013 Oct 3. J Phys Chem B. 2013. PMID: 24044356

2

Molecular dynamics simulation of protein folding by essential dynamics sampling: folding landscape of horse heart cytochrome c.

Daidone I, Amadei A, Roccatano D, Nola AD. Daidone I, et al. Biophys J. 2003 Nov;85(5):2865-71. doi: 10.1016/S0006-3495(03)74709-2. Biophys J. 2003. PMID: 14581191 Free PMC article.

3

Molecular dynamics simulation of the aggregation of the core-recognition motif of the islet amyloid polypeptide in explicit water.

Colombo G, Daidone I, Gazit E, Amadei A, Di Nola A. Colombo G, et al. Among authors: daidone i. Proteins. 2005 May 15;59(3):519-27. doi: 10.1002/prot.20426. Proteins. 2005. PMID: 15778964

4

Thermodynamic and kinetic characterization of a beta-hairpin peptide in solution: an extended phase space sampling by molecular dynamics simulations in explicit water.

Daidone I, Amadei A, Di Nola A. Daidone I, et al. Proteins. 2005 May 15;59(3):510-8. doi: 10.1002/prot.20427. Proteins. 2005. PMID: 15789436

5

Molecular dynamics simulation of sperm whale myoglobin: effects of mutations and trapped CO on the structure and dynamics of cavities.

Bossa C, Amadei A, Daidone I, Anselmi M, Vallone B, Brunori M, Di Nola A. Bossa C, et al. Among authors: daidone i. Biophys J. 2005 Jul;89(1):465-74. doi: 10.1529/biophysj.104.055020. Epub 2005 Apr 22. Biophys J. 2005. PMID: 15849248 Free PMC article.

6

Theoretical characterization of alpha-helix and beta-hairpin folding kinetics.

Daidone I, D'Abramo M, Di Nola A, Amadei A. Daidone I, et al. J Am Chem Soc. 2005 Oct 26;127(42):14825-32. doi: 10.1021/ja053383f. J Am Chem Soc. 2005. PMID: 16231936

7

Aggregation of small peptides studied by molecular dynamics simulations.

Flöck D, Rossetti G, Daidone I, Amadei A, Di Nola A. Flöck D, et al. Among authors: daidone i. Proteins. 2006 Dec 1;65(4):914-21. doi: 10.1002/prot.21168. Proteins. 2006. PMID: 16981204

8

Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding.

Daidone I, Ulmschneider MB, Di Nola A, Amadei A, Smith JC. Daidone I, et al. Proc Natl Acad Sci U S A. 2007 Sep 25;104(39):15230-5. doi: 10.1073/pnas.0701401104. Epub 2007 Sep 19. Proc Natl Acad Sci U S A. 2007. PMID: 17881585 Free PMC article.

9

Solvent electrostriction-driven peptide folding revealed by quasi-Gaussian entropy theory and molecular dynamics simulation.

Noé F, Daidone I, Smith JC, di Nola A, Amadei A. Noé F, et al. Among authors: daidone i. J Phys Chem B. 2008 Sep 4;112(35):11155-63. doi: 10.1021/jp801391t. Epub 2008 Aug 12. J Phys Chem B. 2008. PMID: 18698708

10

Theoretical-computational modelling of infrared spectra in peptides and proteins: a new frontier for combined theoretical-experimental investigations.

Amadei A, Daidone I, Di Nola A, Aschi M. Amadei A, et al. Among authors: daidone i. Curr Opin Struct Biol. 2010 Apr;20(2):155-61. doi: 10.1016/j.sbi.2010.01.001. Epub 2010 Jan 29. Curr Opin Struct Biol. 2010. PMID: 20116996 Review.

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