de Vries AH - Search Results

1

First-principles calculation of the optical properties of an amphiphilic cyanine dye aggregate.

Haverkort F, Stradomska A, de Vries AH, Knoester J. Haverkort F, et al. Among authors: de vries ah. J Phys Chem A. 2014 Feb 13;118(6):1012-23. doi: 10.1021/jp4112487. Epub 2014 Jan 29. J Phys Chem A. 2014. PMID: 24422675

2

The MARTINI force field: coarse grained model for biomolecular simulations.

Marrink SJ, Risselada HJ, Yefimov S, Tieleman DP, de Vries AH. Marrink SJ, et al. Among authors: de vries ah. J Phys Chem B. 2007 Jul 12;111(27):7812-24. doi: 10.1021/jp071097f. Epub 2007 Jun 15. J Phys Chem B. 2007. PMID: 17569554 Free article.

3

Location, tilt, and binding: a molecular dynamics study of voltage-sensitive dyes in biomembranes.

Hinner MJ, Marrink SJ, de Vries AH. Hinner MJ, et al. Among authors: de vries ah. J Phys Chem B. 2009 Dec 3;113(48):15807-19. doi: 10.1021/jp907981y. J Phys Chem B. 2009. PMID: 19894688

4

Reconstruction of atomistic details from coarse-grained structures.

Rzepiela AJ, Schäfer LV, Goga N, Risselada HJ, De Vries AH, Marrink SJ. Rzepiela AJ, et al. Among authors: de vries ah. J Comput Chem. 2010 Apr 30;31(6):1333-43. doi: 10.1002/jcc.21415. J Comput Chem. 2010. PMID: 20087907

5

Investigating the structure of aggregates of an amphiphilic cyanine dye with molecular dynamics simulations.

Haverkort F, Stradomska A, de Vries AH, Knoester J. Haverkort F, et al. Among authors: de vries ah. J Phys Chem B. 2013 May 16;117(19):5857-67. doi: 10.1021/jp4005696. Epub 2013 May 3. J Phys Chem B. 2013. PMID: 23590410

6

Ganglioside-Lipid and Ganglioside-Protein Interactions Revealed by Coarse-Grained and Atomistic Molecular Dynamics Simulations.

Gu RX, Ingólfsson HI, de Vries AH, Marrink SJ, Tieleman DP. Gu RX, et al. Among authors: de vries ah. J Phys Chem B. 2017 Apr 20;121(15):3262-3275. doi: 10.1021/acs.jpcb.6b07142. Epub 2016 Oct 4. J Phys Chem B. 2017. PMID: 27610460 Free PMC article.

7

Transferable MARTINI Model of Poly(ethylene Oxide).

Grunewald F, Rossi G, de Vries AH, Marrink SJ, Monticelli L. Grunewald F, et al. Among authors: de vries ah. J Phys Chem B. 2018 Jul 26;122(29):7436-7449. doi: 10.1021/acs.jpcb.8b04760. Epub 2018 Jul 13. J Phys Chem B. 2018. PMID: 29966087

8

Mechanism of Ostwald Ripening in 2D Physisorbed Assemblies at Molecular Time and Length Scale by Molecular Dynamics Simulations.

Piskorz TK, de Vries AH, De Feyter S, van Esch JH. Piskorz TK, et al. Among authors: de vries ah, de feyter s. J Phys Chem C Nanomater Interfaces. 2018 Oct 25;122(42):24380-24385. doi: 10.1021/acs.jpcc.8b06432. Epub 2018 Sep 25. J Phys Chem C Nanomater Interfaces. 2018. PMID: 30774741 Free PMC article.

9

Dual Resolution Membrane Simulations Using Virtual Sites.

Liu Y, De Vries AH, Barnoud J, Pezeshkian W, Melcr J, Marrink SJ. Liu Y, et al. Among authors: de vries ah. J Phys Chem B. 2020 May 14;124(19):3944-3953. doi: 10.1021/acs.jpcb.0c01842. Epub 2020 May 1. J Phys Chem B. 2020. PMID: 32314586 Free PMC article.

10

Structural characterization of supramolecular hollow nanotubes with atomistic simulations and SAXS.

Patmanidis I , de Vries AH , Wassenaar TA , Wang W , Portale G , Marrink SJ . Patmanidis I , et al. Among authors: de vries ah. Phys Chem Chem Phys. 2020 Sep 30;22(37):21083-21093. doi: 10.1039/d0cp03282d. Phys Chem Chem Phys. 2020. PMID: 32945311

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