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A broadly implementable research course in phage discovery and genomics for first-year undergraduate students.
Jordan TC, Burnett SH, Carson S, Caruso SM, Clase K, DeJong RJ, Dennehy JJ, Denver DR, Dunbar D, Elgin SC, Findley AM, Gissendanner CR, Golebiewska UP, Guild N, Hartzog GA, Grillo WH, Hollowell GP, Hughes LE, Johnson A, King RA, Lewis LO, Li W, Rosenzweig F, Rubin MR, Saha MS, Sandoz J, Shaffer CD, Taylor B, Temple L, Vazquez E, Ware VC, Barker LP, Bradley KW, Jacobs-Sera D, Pope WH, Russell DA, Cresawn SG, Lopatto D, Bailey CP, Hatfull GF. Jordan TC, et al. Among authors: caruso sm. mBio. 2014 Feb 4;5(1):e01051-13. doi: 10.1128/mBio.01051-13. mBio. 2014. PMID: 24496795 Free PMC article.
Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.
Pope WH, Jacobs-Sera D, Russell DA, Peebles CL, Al-Atrache Z, Alcoser TA, Alexander LM, Alfano MB, Alford ST, Amy NE, Anderson MD, Anderson AG, Ang AA, Ares M Jr, Barber AJ, Barker LP, Barrett JM, Barshop WD, Bauerle CM, Bayles IM, Belfield KL, Best AA, Borjon A Jr, Bowman CA, Boyer CA, Bradley KW, Bradley VA, Broadway LN, Budwal K, Busby KN, Campbell IW, Campbell AM, Carey A, Caruso SM, Chew RD, Cockburn CL, Cohen LB, Corajod JM, Cresawn SG, Davis KR, Deng L, Denver DR, Dixon BR, Ekram S, Elgin SC, Engelsen AE, English BE, Erb ML, Estrada C, Filliger LZ, Findley AM, Forbes L, Forsyth MH, Fox TM, Fritz MJ, Garcia R, George ZD, Georges AE, Gissendanner CR, Goff S, Goldstein R, Gordon KC, Green RD, Guerra SL, Guiney-Olsen KR, Guiza BG, Haghighat L, Hagopian GV, Harmon CJ, Harmson JS, Hartzog GA, Harvey SE, He S, He KJ, Healy KE, Higinbotham ER, Hildebrandt EN, Ho JH, Hogan GM, Hohenstein VG, Holz NA, Huang VJ, Hufford EL, Hynes PM, Jackson AS, Jansen EC, Jarvik J, Jasinto PG, Jordan TC, Kasza T, Katelyn MA, Kelsey JS, Kerrigan LA, Khaw D, Kim J, Knutter JZ, Ko CC, Larkin GV, Laroche JR, Latif A, Leuba KD, Leuba SI, Lewis LO, Loesser-Casey KE, Long CA, Lopez AJ, Lowery N, Lu T… See abstract for full author list ➔ Pope WH, et al. Among authors: caruso sm. PLoS One. 2011 Jan 27;6(1):e16329. doi: 10.1371/journal.pone.0016329. PLoS One. 2011. PMID: 21298013 Free PMC article.
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.
Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course. Pope WH, et al. Elife. 2015 Apr 28;4:e06416. doi: 10.7554/eLife.06416. Elife. 2015. PMID: 25919952 Free PMC article.
An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning.
Hanauer DI, Graham MJ; SEA-PHAGES; Betancur L, Bobrownicki A, Cresawn SG, Garlena RA, Jacobs-Sera D, Kaufmann N, Pope WH, Russell DA, Jacobs WR Jr, Sivanathan V, Asai DJ, Hatfull GF. Hanauer DI, et al. Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13531-13536. doi: 10.1073/pnas.1718188115. Epub 2017 Dec 5. Proc Natl Acad Sci U S A. 2017. PMID: 29208718 Free PMC article.
An inclusive Research Education Community (iREC) Model to Facilitate Undergraduate Science Education Reform.
Monti DL, Gill JC, Adair TL, Adams SD, Ahumada-Santos YP, Amaya I, Anders KR, Anderson JR, Antunes MS, Ayuk MA, Baliraine FN, Bates TC, Beyer AR, Bhalla SS, Bouklas T, Bullock SK, Butela KA, Byrum CA, Caruso SM, Chong RA, Chung HM, Conant SB, Condon BM, Crump KE, D'Elia T, Dennis MK, DeVeaux LC, Diacovich L, Diaz A, Duffy I, Edwards DC, Fallest-Strobl PC, Findley AM, Fisher MR, Fogarty MP, Frost VJ, Gainey MD, Galle CS, Gibb B, Golebiewska UP, Gramajo HC, Grinath AS, Guerrero JA, Guild NA, Gunn KE, Gurney SM, Hughes LE, Jayachandran P, Johnson KC, Johnson AA, Kanak AE, Kanther ML, King RA, Kohl KP, Lee-Soety JY, Lewis LO, Lindberg HM, Madden JA, Martin BJ, Mastropaolo MD, McClory SP, Merkhofer EC, Merkle JA, Mitchell JC, Mussi MA, Nieto-Fernandez FE, Nissen JC, Nsa IY, O'Donnell MG, Overath RD, Page ST, Panagakis A, Parra Unda JR, Pass MB, Morales TGP, Peters NT, Plymale R, Pollenz RS, Reyna NS, Rinehart CA, Rocheleau JM, Rombold JS, Rossier O, Rudner AD, Rueschhoff EE, Shaffer CD, Smith MAV, Sprenkle AB, Sunnen CN, Thomas MA, Tigges MM, Tobiason DM, Tolsma SS, Garcia JT, Uetz P, Vazquez E, Ward CM, Ware VC, Washington JM, Waterman MJ, Westholm DE, Wheaton KA, White SJ, Wil… See abstract for full author list ➔ Monti DL, et al. Among authors: caruso sm. Front Educ (Lausanne). 2024;9:1442318. doi: 10.3389/feduc.2024.1442318. Epub 2024 Aug 20. Front Educ (Lausanne). 2024. PMID: 39686966 Free PMC article.
Models of Classroom Assessment for Course-Based Research Experiences.
Hanauer DI, Zhang T, Graham MJ, Adams SD, Ahumada-Santos YP, Alvey RM, Antunes MS, Ayuk MA, Báez-Flores ME, Bancroft CT, Bates TC, Bechman MJ, Behr E, Beyer AR, Bortz RL, Bowder DM, Briggs LA, Brown-Kennerly V, Buckholt MA, Bullock SK, Butela KA, Byrum CA, Caruso SM, Chia CP, Chong RA, Chung HM, Clase KL, Coleman ST, Parks Collins D, Conant SB, Condon BM, Connerly PL, Connors BJ, Cook-Easterwood JE, Crump KE, D'Elia T, Dennis MK, DeVeaux LC, Diacovich L, Duffy I, Edgington NP, Edwards DC, Egwuatu TOG, Eivazova ER, Fallest-Strobl PC, Fillman CL, Findley AM, Fisher E, Fisher MR, Fogarty MP, Freise AC, Frost VJ, Gainey MD, Costas AMG, Garza AA, Gavin HE, Ghittoni R, Gibb B, Golebiewska UP, Grinath AS, R Gurney SM, Hare RF, Heninger SG, Hinz JM, Hughes LE, Jayachandran P, Johnson KC, Johnson AA, Kanther M, Kenna M, Kirkpatrick BL, Klyczek KK, Kohl KP, Kuchka M, LaPeruta AJ, Lee-Soety JY, Lewis LO, Lindberg HM, Madden JA, Markov SA, Mastropaolo MD, Mathur V, McClory SP, Merkhofer EC, Merkle JA, Michael SF, Mitchell JC, Molloy SD, Monti DL, Mussi MA, Nance H, Nieto-Fernandez FE, Nissen JC, Nsa IY, O'Donnell MG, Page ST, Panagakis A, Parra-Unda JR, Pelletier TA, Perez Morales TG, … See abstract for full author list ➔ Hanauer DI, et al. Among authors: caruso sm. Front Educ (Lausanne). 2023;8:1279921. doi: 10.3389/feduc.2023.1279921. Epub 2023 Nov 27. Front Educ (Lausanne). 2023. PMID: 39687267 Free PMC article.
Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).
Ramsey J, McIntosh B, Renfro D, Aleksander SA, LaBonte S, Ross C, Zweifel AE, Liles N, Farrar S, Gill JJ, Erill I, Ades S, Berardini TZ, Bennett JA, Brady S, Britton R, Carbon S, Caruso SM, Clements D, Dalia R, Defelice M, Doyle EL, Friedberg I, Gurney SMR, Hughes L, Johnson A, Kowalski JM, Li D, Lovering RC, Mans TL, McCarthy F, Moore SD, Murphy R, Paustian TD, Perdue S, Peterson CN, Prüß BM, Saha MS, Sheehy RR, Tansey JT, Temple L, Thorman AW, Trevino S, Vollmer AC, Walbot V, Willey J, Siegele DA, Hu JC. Ramsey J, et al. Among authors: caruso sm. PLoS Comput Biol. 2021 Oct 28;17(10):e1009463. doi: 10.1371/journal.pcbi.1009463. eCollection 2021 Oct. PLoS Comput Biol. 2021. PMID: 34710081 Free PMC article.
40 results