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A ddRAD-based genetic map and its integration with the genome assembly of Japanese eel (Anguilla japonica) provides insights into genome evolution after the teleost-specific genome duplication.
Kai W, Nomura K, Fujiwara A, Nakamura Y, Yasuike M, Ojima N, Masaoka T, Ozaki A, Kazeto Y, Gen K, Nagao J, Tanaka H, Kobayashi T, Ototake M. Kai W, et al. Among authors: ototake m. BMC Genomics. 2014 Mar 26;15:233. doi: 10.1186/1471-2164-15-233. BMC Genomics. 2014. PMID: 24669946 Free PMC article.
V-GAP: Viral genome assembly pipeline.
Nakamura Y, Yasuike M, Nishiki I, Iwasaki Y, Fujiwara A, Kawato Y, Nakai T, Nagai S, Kobayashi T, Gojobori T, Ototake M. Nakamura Y, et al. Among authors: ototake m. Gene. 2016 Feb 1;576(2 Pt 1):676-80. doi: 10.1016/j.gene.2015.10.029. Epub 2015 Oct 22. Gene. 2016. PMID: 26475935 Free article.
Effective de novo assembly of fish genome using haploid larvae.
Iwasaki Y, Nishiki I, Nakamura Y, Yasuike M, Kai W, Nomura K, Yoshida K, Nomura Y, Fujiwara A, Kobayashi T, Ototake M. Iwasaki Y, et al. Among authors: ototake m. Gene. 2016 Feb 1;576(2 Pt 1):644-9. doi: 10.1016/j.gene.2015.10.015. Epub 2015 Oct 23. Gene. 2016. PMID: 26478467 Free article.
A genetic linkage map for the tiger pufferfish, Takifugu rubripes.
Kai W, Kikuchi K, Fujita M, Suetake H, Fujiwara A, Yoshiura Y, Ototake M, Venkatesh B, Miyaki K, Suzuki Y. Kai W, et al. Among authors: ototake m. Genetics. 2005 Sep;171(1):227-38. doi: 10.1534/genetics.105.042051. Epub 2005 Jun 21. Genetics. 2005. PMID: 15972462 Free PMC article.
Interchromosomal duplication of major histocompatibility complex class I regions in rainbow trout (Oncorhynchus mykiss), a species with a presumably recent tetraploid ancestry.
Shiina T, Dijkstra JM, Shimizu S, Watanabe A, Yanagiya K, Kiryu I, Fujiwara A, Nishida-Umehara C, Kaba Y, Hirono I, Yoshiura Y, Aoki T, Inoko H, Kulski JK, Ototake M. Shiina T, et al. Among authors: ototake m. Immunogenetics. 2005 Mar;56(12):878-93. doi: 10.1007/s00251-004-0755-1. Epub 2005 Feb 5. Immunogenetics. 2005. PMID: 15696305
66 results