Ma Q - Search Results

1

DMINDA: an integrated web server for DNA motif identification and analyses.

Ma Q, Zhang H, Mao X, Zhou C, Liu B, Chen X, Xu Y. Ma Q, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W12-9. doi: 10.1093/nar/gku315. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753419 Free PMC article.

2

QUBIC: a qualitative biclustering algorithm for analyses of gene expression data.

Li G, Ma Q, Tang H, Paterson AH, Xu Y. Li G, et al. Among authors: ma q. Nucleic Acids Res. 2009 Aug;37(15):e101. doi: 10.1093/nar/gkp491. Epub 2009 Jun 9. Nucleic Acids Res. 2009. PMID: 19509312 Free PMC article.

3

A new framework for identifying cis-regulatory motifs in prokaryotes.

Li G, Liu B, Ma Q, Xu Y. Li G, et al. Among authors: ma q. Nucleic Acids Res. 2011 Apr;39(7):e42. doi: 10.1093/nar/gkq948. Epub 2010 Dec 11. Nucleic Acids Res. 2011. PMID: 21149261 Free PMC article.

4

Integration of sequence-similarity and functional association information can overcome intrinsic problems in orthology mapping across bacterial genomes.

Li G, Ma Q, Mao X, Yin Y, Zhu X, Xu Y. Li G, et al. Among authors: ma q. Nucleic Acids Res. 2011 Dec;39(22):e150. doi: 10.1093/nar/gkr766. Epub 2011 Sep 29. Nucleic Acids Res. 2011. PMID: 21965536 Free PMC article.

5

QServer: a biclustering server for prediction and assessment of co-expressed gene clusters.

Zhou F, Ma Q, Li G, Xu Y. Zhou F, et al. Among authors: ma q. PLoS One. 2012;7(3):e32660. doi: 10.1371/journal.pone.0032660. Epub 2012 Mar 5. PLoS One. 2012. PMID: 22403692 Free PMC article.

6

Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis.

Wang S, Yin Y, Ma Q, Tang X, Hao D, Xu Y. Wang S, et al. Among authors: ma q. BMC Plant Biol. 2012 Aug 9;12:138. doi: 10.1186/1471-2229-12-138. BMC Plant Biol. 2012. PMID: 22877077 Free PMC article.

7

Global genomic arrangement of bacterial genes is closely tied with the total transcriptional efficiency.

Ma Q, Xu Y. Ma Q, et al. Genomics Proteomics Bioinformatics. 2013 Feb;11(1):66-71. doi: 10.1016/j.gpb.2013.01.004. Epub 2013 Jan 26. Genomics Proteomics Bioinformatics. 2013. PMID: 23434046 Free PMC article.

8

Computational analyses of transcriptomic data reveal the dynamic organization of the Escherichia coli chromosome under different conditions.

Ma Q, Yin Y, Schell MA, Zhang H, Li G, Xu Y. Ma Q, et al. Nucleic Acids Res. 2013 Jun;41(11):5594-603. doi: 10.1093/nar/gkt261. Epub 2013 Apr 17. Nucleic Acids Res. 2013. PMID: 23599001 Free PMC article.

9

An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale.

Ma Q, Liu B, Zhou C, Yin Y, Li G, Xu Y. Ma Q, et al. Bioinformatics. 2013 Sep 15;29(18):2261-8. doi: 10.1093/bioinformatics/btt397. Epub 2013 Jul 10. Bioinformatics. 2013. PMID: 23846744

10

Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress.

Wilson CM, Yang S, Rodriguez M Jr, Ma Q, Johnson CM, Dice L, Xu Y, Brown SD. Wilson CM, et al. Among authors: ma q. Biotechnol Biofuels. 2013 Sep 12;6(1):131. doi: 10.1186/1754-6834-6-131. Biotechnol Biofuels. 2013. PMID: 24028713 Free PMC article.

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