Xu Y - Search Results

1

DMINDA: an integrated web server for DNA motif identification and analyses.

Ma Q, Zhang H, Mao X, Zhou C, Liu B, Chen X, Xu Y. Ma Q, et al. Among authors: xu y. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W12-9. doi: 10.1093/nar/gku315. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753419 Free PMC article.

2

Accurate recognition of cis-regulatory motifs with the correct lengths in prokaryotic genomes.

Li G, Liu B, Xu Y. Li G, et al. Among authors: xu y. Nucleic Acids Res. 2010 Jan;38(2):e12. doi: 10.1093/nar/gkp907. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906734 Free PMC article.

3

A new framework for identifying cis-regulatory motifs in prokaryotes.

Li G, Liu B, Ma Q, Xu Y. Li G, et al. Among authors: xu y. Nucleic Acids Res. 2011 Apr;39(7):e42. doi: 10.1093/nar/gkq948. Epub 2010 Dec 11. Nucleic Acids Res. 2011. PMID: 21149261 Free PMC article.

4

dbCAN: a web resource for automated carbohydrate-active enzyme annotation.

Yin Y, Mao X, Yang J, Chen X, Mao F, Xu Y. Yin Y, et al. Among authors: xu y. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W445-51. doi: 10.1093/nar/gks479. Epub 2012 May 29. Nucleic Acids Res. 2012. PMID: 22645317 Free PMC article.

5

An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale.

Ma Q, Liu B, Zhou C, Yin Y, Li G, Xu Y. Ma Q, et al. Among authors: xu y. Bioinformatics. 2013 Sep 15;29(18):2261-8. doi: 10.1093/bioinformatics/btt397. Epub 2013 Jul 10. Bioinformatics. 2013. PMID: 23846744

6

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

Mao X, Ma Q, Zhou C, Chen X, Zhang H, Yang J, Mao F, Lai W, Xu Y. Mao X, et al. Among authors: xu y. Nucleic Acids Res. 2014 Jan;42(Database issue):D654-9. doi: 10.1093/nar/gkt1048. Epub 2013 Nov 7. Nucleic Acids Res. 2014. PMID: 24214966 Free PMC article.

7

SeqTU: A Web Server for Identification of Bacterial Transcription Units.

Chen X, Chou WC, Ma Q, Xu Y. Chen X, et al. Among authors: xu y. Sci Rep. 2017 Mar 7;7:43925. doi: 10.1038/srep43925. Sci Rep. 2017. PMID: 28266571 Free PMC article.

8

QUBIC: a qualitative biclustering algorithm for analyses of gene expression data.

Li G, Ma Q, Tang H, Paterson AH, Xu Y. Li G, et al. Among authors: xu y. Nucleic Acids Res. 2009 Aug;37(15):e101. doi: 10.1093/nar/gkp491. Epub 2009 Jun 9. Nucleic Acids Res. 2009. PMID: 19509312 Free PMC article.

9

SEAS: a system for SEED-based pathway enrichment analysis.

Mao X, Zhang Y, Xu Y. Mao X, et al. Among authors: xu y. PLoS One. 2011;6(7):e22556. doi: 10.1371/journal.pone.0022556. Epub 2011 Jul 22. PLoS One. 2011. PMID: 21799897 Free PMC article.

10

Integration of sequence-similarity and functional association information can overcome intrinsic problems in orthology mapping across bacterial genomes.

Li G, Ma Q, Mao X, Yin Y, Zhu X, Xu Y. Li G, et al. Among authors: xu y. Nucleic Acids Res. 2011 Dec;39(22):e150. doi: 10.1093/nar/gkr766. Epub 2011 Sep 29. Nucleic Acids Res. 2011. PMID: 21965536 Free PMC article.

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