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326 results

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Page 1
Assessing computational tools for the discovery of transcription factor binding sites.
Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, Makeev VJ, Mironov AA, Noble WS, Pavesi G, Pesole G, Régnier M, Simonis N, Sinha S, Thijs G, van Helden J, Vandenbogaert M, Weng Z, Workman C, Ye C, Zhu Z. Tompa M, et al. Among authors: noble ws. Nat Biotechnol. 2005 Jan;23(1):137-44. doi: 10.1038/nbt1053. Nat Biotechnol. 2005. PMID: 15637633 Free article.
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.
Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A, Weaver M, Shafer A, Lee K, Neri F, Humbert R, Singer MA, Richmond TA, Dorschner MO, McArthur M, Hawrylycz M, Green RD, Navas PA, Noble WS, Stamatoyannopoulos JA. Sabo PJ, et al. Among authors: noble ws. Nat Methods. 2006 Jul;3(7):511-8. doi: 10.1038/nmeth890. Nat Methods. 2006. PMID: 16791208
Quantifying similarity between motifs.
Gupta S, Stamatoyannopoulos JA, Bailey TL, Noble WS. Gupta S, et al. Among authors: noble ws. Genome Biol. 2007;8(2):R24. doi: 10.1186/gb-2007-8-2-r24. Genome Biol. 2007. PMID: 17324271 Free PMC article.
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
Hesselberth JR, Chen X, Zhang Z, Sabo PJ, Sandstrom R, Reynolds AP, Thurman RE, Neph S, Kuehn MS, Noble WS, Fields S, Stamatoyannopoulos JA. Hesselberth JR, et al. Among authors: noble ws. Nat Methods. 2009 Apr;6(4):283-9. doi: 10.1038/nmeth.1313. Epub 2009 Mar 22. Nat Methods. 2009. PMID: 19305407 Free PMC article.
MEME SUITE: tools for motif discovery and searching.
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. Bailey TL, et al. Among authors: noble ws. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8. doi: 10.1093/nar/gkp335. Epub 2009 May 20. Nucleic Acids Res. 2009. PMID: 19458158 Free PMC article.
FIMO: scanning for occurrences of a given motif.
Grant CE, Bailey TL, Noble WS. Grant CE, et al. Among authors: noble ws. Bioinformatics. 2011 Apr 1;27(7):1017-8. doi: 10.1093/bioinformatics/btr064. Epub 2011 Feb 16. Bioinformatics. 2011. PMID: 21330290 Free PMC article.
Improved similarity scores for comparing motifs.
Tanaka E, Bailey T, Grant CE, Noble WS, Keich U. Tanaka E, et al. Among authors: noble ws. Bioinformatics. 2011 Jun 15;27(12):1603-9. doi: 10.1093/bioinformatics/btr257. Epub 2011 May 4. Bioinformatics. 2011. PMID: 21543443 Free PMC article.
326 results