Damborsky J - Search Results

1

CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures.

Kozlikova B, Sebestova E, Sustr V, Brezovsky J, Strnad O, Daniel L, Bednar D, Pavelka A, Manak M, Bezdeka M, Benes P, Kotry M, Gora A, Damborsky J, Sochor J. Kozlikova B, et al. Among authors: damborsky j. Bioinformatics. 2014 Sep 15;30(18):2684-5. doi: 10.1093/bioinformatics/btu364. Epub 2014 May 29. Bioinformatics. 2014. PMID: 24876375

2

TRITON: in silico construction of protein mutants and prediction of their activities.

Prokop M, Damborský J, Koca J. Prokop M, et al. Among authors: damborsky j. Bioinformatics. 2000 Sep;16(9):845-6. doi: 10.1093/bioinformatics/16.9.845. Bioinformatics. 2000. PMID: 11187152

3

CAVER: a new tool to explore routes from protein clefts, pockets and cavities.

Petrek M, Otyepka M, Banás P, Kosinová P, Koca J, Damborský J. Petrek M, et al. Among authors: damborsky j. BMC Bioinformatics. 2006 Jun 22;7:316. doi: 10.1186/1471-2105-7-316. BMC Bioinformatics. 2006. PMID: 16792811 Free PMC article.

4

Identification of tunnels in proteins, nucleic acids, inorganic materials and molecular ensembles.

Damborský J, Petrek M, Banás P, Otyepka M. Damborský J, et al. Biotechnol J. 2007 Jan;2(1):62-7. doi: 10.1002/biot.200600208. Biotechnol J. 2007. PMID: 17183511

5

Nanosecond time-dependent Stokes shift at the tunnel mouth of haloalkane dehalogenases.

Jesenská A, Sýkora J, Olzyńska A, Brezovský J, Zdráhal Z, Damborský J, Hof M. Jesenská A, et al. Among authors: damborsky j. J Am Chem Soc. 2009 Jan 21;131(2):494-501. doi: 10.1021/ja804020q. J Am Chem Soc. 2009. PMID: 19113888

6

Computational tools for designing and engineering biocatalysts.

Damborsky J, Brezovsky J. Damborsky J, et al. Curr Opin Chem Biol. 2009 Feb;13(1):26-34. doi: 10.1016/j.cbpa.2009.02.021. Epub 2009 Mar 16. Curr Opin Chem Biol. 2009. PMID: 19297237 Review.

7

HotSpot Wizard: a web server for identification of hot spots in protein engineering.

Pavelka A, Chovancova E, Damborsky J. Pavelka A, et al. Among authors: damborsky j. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W376-83. doi: 10.1093/nar/gkp410. Epub 2009 May 21. Nucleic Acids Res. 2009. PMID: 19465397 Free PMC article.

8

Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering.

Prokop Z, Sato Y, Brezovsky J, Mozga T, Chaloupkova R, Koudelakova T, Jerabek P, Stepankova V, Natsume R, van Leeuwen JG, Janssen DB, Florian J, Nagata Y, Senda T, Damborsky J. Prokop Z, et al. Among authors: damborsky j. Angew Chem Int Ed Engl. 2010 Aug 16;49(35):6111-5. doi: 10.1002/anie.201001753. Angew Chem Int Ed Engl. 2010. PMID: 20645368 No abstract available.

9

Substrate specificity of haloalkane dehalogenases.

Koudelakova T, Chovancova E, Brezovsky J, Monincova M, Fortova A, Jarkovsky J, Damborsky J. Koudelakova T, et al. Among authors: damborsky j. Biochem J. 2011 Apr 15;435(2):345-54. doi: 10.1042/BJ20101405. Biochem J. 2011. PMID: 21294712

10

Software tools for identification, visualization and analysis of protein tunnels and channels.

Brezovsky J, Chovancova E, Gora A, Pavelka A, Biedermannova L, Damborsky J. Brezovsky J, et al. Among authors: damborsky j. Biotechnol Adv. 2013 Jan-Feb;31(1):38-49. doi: 10.1016/j.biotechadv.2012.02.002. Epub 2012 Feb 10. Biotechnol Adv. 2013. PMID: 22349130 Review.

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