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A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.
Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martínez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J Jr, Miller S, Chiu CY. Naccache SN, et al. Among authors: greninger al. Genome Res. 2014 Jul;24(7):1180-92. doi: 10.1101/gr.171934.113. Epub 2014 Jun 4. Genome Res. 2014. PMID: 24899342 Free PMC article.
Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections.
Chiu CY, Greninger AL, Kanada K, Kwok T, Fischer KF, Runckel C, Louie JK, Glaser CA, Yagi S, Schnurr DP, Haggerty TD, Parsonnet J, Ganem D, DeRisi JL. Chiu CY, et al. Among authors: greninger al. Proc Natl Acad Sci U S A. 2008 Sep 16;105(37):14124-9. doi: 10.1073/pnas.0805968105. Epub 2008 Sep 3. Proc Natl Acad Sci U S A. 2008. PMID: 18768820 Free PMC article.
Serological evidence of human klassevirus infection.
Greninger AL, Holtz L, Kang G, Ganem D, Wang D, DeRisi JL. Greninger AL, et al. Clin Vaccine Immunol. 2010 Oct;17(10):1584-8. doi: 10.1128/CVI.00152-10. Epub 2010 Aug 25. Clin Vaccine Immunol. 2010. PMID: 20739504 Free PMC article.
Global identification of peptidase specificity by multiplex substrate profiling.
O'Donoghue AJ, Eroy-Reveles AA, Knudsen GM, Ingram J, Zhou M, Statnekov JB, Greninger AL, Hostetter DR, Qu G, Maltby DA, Anderson MO, Derisi JL, McKerrow JH, Burlingame AL, Craik CS. O'Donoghue AJ, et al. Among authors: greninger al. Nat Methods. 2012 Nov;9(11):1095-100. doi: 10.1038/nmeth.2182. Epub 2012 Sep 30. Nat Methods. 2012. PMID: 23023596 Free PMC article.
386 results