Pupov D - Search Results

1

Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme.

Basu RS, Warner BA, Molodtsov V, Pupov D, Esyunina D, Fernández-Tornero C, Kulbachinskiy A, Murakami KS. Basu RS, et al. Among authors: pupov d. J Biol Chem. 2014 Aug 29;289(35):24549-59. doi: 10.1074/jbc.M114.584037. Epub 2014 Jun 27. J Biol Chem. 2014. PMID: 24973216 Free PMC article.

2

Multiple roles of the RNA polymerase {beta}' SW2 region in transcription initiation, promoter escape, and RNA elongation.

Pupov D, Miropolskaya N, Sevostyanova A, Bass I, Artsimovitch I, Kulbachinskiy A. Pupov D, et al. Nucleic Acids Res. 2010 Sep;38(17):5784-96. doi: 10.1093/nar/gkq355. Epub 2010 May 10. Nucleic Acids Res. 2010. PMID: 20457751 Free PMC article.

3

Distinct functions of regions 1.1 and 1.2 of RNA polymerase σ subunits from Escherichia coli and Thermus aquaticus in transcription initiation.

Miropolskaya N, Ignatov A, Bass I, Zhilina E, Pupov D, Kulbachinskiy A. Miropolskaya N, et al. Among authors: pupov d. J Biol Chem. 2012 Jul 6;287(28):23779-89. doi: 10.1074/jbc.M112.363242. Epub 2012 May 17. J Biol Chem. 2012. PMID: 22605342 Free PMC article.

4

Single-strand promoter traps for bacterial RNA polymerase.

Pupov D, Esyunina D, Feklistov A, Kulbachinskiy A. Pupov D, et al. Biochem J. 2013 Jun 1;452(2):241-8. doi: 10.1042/BJ20130069. Biochem J. 2013. PMID: 23517087

5

Distinct functions of the RNA polymerase σ subunit region 3.2 in RNA priming and promoter escape.

Pupov D, Kuzin I, Bass I, Kulbachinskiy A. Pupov D, et al. Nucleic Acids Res. 2014 Apr;42(7):4494-504. doi: 10.1093/nar/gkt1384. Epub 2014 Jan 21. Nucleic Acids Res. 2014. PMID: 24452800 Free PMC article.

6

Single-stranded DNA aptamers for functional probing of bacterial RNA polymerase.

Pupov D, Kulbachinskiy A. Pupov D, et al. Methods Mol Biol. 2015;1276:165-83. doi: 10.1007/978-1-4939-2392-2_9. Methods Mol Biol. 2015. PMID: 25665563

7

Mutations in the CRE pocket of bacterial RNA polymerase affect multiple steps of transcription.

Petushkov I, Pupov D, Bass I, Kulbachinskiy A. Petushkov I, et al. Among authors: pupov d. Nucleic Acids Res. 2015 Jul 13;43(12):5798-809. doi: 10.1093/nar/gkv504. Epub 2015 May 18. Nucleic Acids Res. 2015. PMID: 25990734 Free PMC article.

8

Lineage-specific variations in the trigger loop modulate RNA proofreading by bacterial RNA polymerases.

Esyunina D, Turtola M, Pupov D, Bass I, Klimašauskas S, Belogurov G, Kulbachinskiy A. Esyunina D, et al. Among authors: pupov d. Nucleic Acids Res. 2016 Feb 18;44(3):1298-308. doi: 10.1093/nar/gkv1521. Epub 2016 Jan 4. Nucleic Acids Res. 2016. PMID: 26733581 Free PMC article.

9

Regulation of transcription initiation by Gfh factors from Deinococcus radiodurans.

Agapov A, Esyunina D, Pupov D, Kulbachinskiy A. Agapov A, et al. Among authors: pupov d. Biochem J. 2016 Dec 1;473(23):4493-4505. doi: 10.1042/BCJ20160659. Epub 2016 Oct 17. Biochem J. 2016. PMID: 27754888

10

Interplay between σ region 3.2 and secondary channel factors during promoter escape by bacterial RNA polymerase.

Petushkov I, Esyunina D, Mekler V, Severinov K, Pupov D, Kulbachinskiy A. Petushkov I, et al. Among authors: pupov d. Biochem J. 2017 Dec 1;474(24):4053-4064. doi: 10.1042/BCJ20170436. Biochem J. 2017. PMID: 29101286

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