Bengtsson H - Search Results

1

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly.

Scheinin I, Sie D, Bengtsson H, van de Wiel MA, Olshen AB, van Thuijl HF, van Essen HF, Eijk PP, Rustenburg F, Meijer GA, Reijneveld JC, Wesseling P, Pinkel D, Albertson DG, Ylstra B. Scheinin I, et al. Among authors: bengtsson h. Genome Res. 2014 Dec;24(12):2022-32. doi: 10.1101/gr.175141.114. Epub 2014 Sep 18. Genome Res. 2014. PMID: 25236618 Free PMC article.

2

Parent-specific copy number in paired tumor-normal studies using circular binary segmentation.

Olshen AB, Bengtsson H, Neuvial P, Spellman PT, Olshen RA, Seshan VE. Olshen AB, et al. Among authors: bengtsson h. Bioinformatics. 2011 Aug 1;27(15):2038-46. doi: 10.1093/bioinformatics/btr329. Epub 2011 Jun 11. Bioinformatics. 2011. PMID: 21666266 Free PMC article.

3

Two distinct routes to oral cancer differing in genome instability and risk for cervical node metastasis.

Bhattacharya A, Roy R, Snijders AM, Hamilton G, Paquette J, Tokuyasu T, Bengtsson H, Jordan RC, Olshen AB, Pinkel D, Schmidt BL, Albertson DG. Bhattacharya A, et al. Among authors: bengtsson h. Clin Cancer Res. 2011 Nov 15;17(22):7024-34. doi: 10.1158/1078-0432.CCR-11-1944. Epub 2011 Nov 8. Clin Cancer Res. 2011. PMID: 22068658 Free PMC article.

4

Human pediatric B-cell acute lymphoblastic leukemias can be classified as B-1 or B-2-like based on a minimal transcriptional signature.

Fitch B, Roy R, Geng H, Montecino-Rodriguez E, Bengtsson H, Gaillard C, Hiam K, Casero D, Olshen AB, Dorshkind K, Kogan SC. Fitch B, et al. Among authors: bengtsson h. Exp Hematol. 2020 Oct;90:65-71.e1. doi: 10.1016/j.exphem.2020.09.184. Epub 2020 Sep 15. Exp Hematol. 2020. PMID: 32946981 Free PMC article.

5

Clonal expansion and epigenetic reprogramming following deletion or amplification of mutant IDH1.

Mazor T, Chesnelong C, Pankov A, Jalbert LE, Hong C, Hayes J, Smirnov IV, Marshall R, Souza CF, Shen Y, Viswanath P, Noushmehr H, Ronen SM, Jones SJM, Marra MA, Cairncross JG, Perry A, Nelson SJ, Chang SM, Bollen AW, Molinaro AM, Bengtsson H, Olshen AB, Weiss S, Phillips JJ, Luchman HA, Costello JF. Mazor T, et al. Among authors: bengtsson h. Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10743-10748. doi: 10.1073/pnas.1708914114. Epub 2017 Sep 15. Proc Natl Acad Sci U S A. 2017. PMID: 28916733 Free PMC article.

6

A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods.

Bengtsson H, Ray A, Spellman P, Speed TP. Bengtsson H, et al. Bioinformatics. 2009 Apr 1;25(7):861-7. doi: 10.1093/bioinformatics/btp074. Epub 2009 Feb 4. Bioinformatics. 2009. PMID: 19193730 Free PMC article.

7

TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays.

Bengtsson H, Neuvial P, Speed TP. Bengtsson H, et al. BMC Bioinformatics. 2010 May 12;11:245. doi: 10.1186/1471-2105-11-245. BMC Bioinformatics. 2010. PMID: 20462408 Free PMC article.

8

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6.

Bengtsson H, Wirapati P, Speed TP. Bengtsson H, et al. Bioinformatics. 2009 Sep 1;25(17):2149-56. doi: 10.1093/bioinformatics/btp371. Epub 2009 Jun 17. Bioinformatics. 2009. PMID: 19535535 Free PMC article.

9

Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data.

Carvalho B, Bengtsson H, Speed TP, Irizarry RA. Carvalho B, et al. Among authors: bengtsson h. Biostatistics. 2007 Apr;8(2):485-99. doi: 10.1093/biostatistics/kxl042. Epub 2006 Dec 22. Biostatistics. 2007. PMID: 17189563

10

Genomic analysis of the origins and evolution of multicentric diffuse lower-grade gliomas.

Hayes J, Yu Y, Jalbert LE, Mazor T, Jones LE, Wood MD, Walsh KM, Bengtsson H, Hong C, Oberndorfer S, Roetzer T, Smirnov IV, Clarke JL, Aghi MK, Chang SM, Nelson SJ, Woehrer A, Phillips JJ, Solomon DA, Costello JF. Hayes J, et al. Among authors: bengtsson h. Neuro Oncol. 2018 Apr 9;20(5):632-641. doi: 10.1093/neuonc/nox205. Neuro Oncol. 2018. PMID: 29077933 Free PMC article.

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