Olshen AB - Search Results

1

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly.

Scheinin I, Sie D, Bengtsson H, van de Wiel MA, Olshen AB, van Thuijl HF, van Essen HF, Eijk PP, Rustenburg F, Meijer GA, Reijneveld JC, Wesseling P, Pinkel D, Albertson DG, Ylstra B. Scheinin I, et al. Among authors: olshen ab. Genome Res. 2014 Dec;24(12):2022-32. doi: 10.1101/gr.175141.114. Epub 2014 Sep 18. Genome Res. 2014. PMID: 25236618 Free PMC article.

2

Genomic copy number analysis of non-small cell lung cancer using array comparative genomic hybridization: implications of the phosphatidylinositol 3-kinase pathway.

Massion PP, Kuo WL, Stokoe D, Olshen AB, Treseler PA, Chin K, Chen C, Polikoff D, Jain AN, Pinkel D, Albertson DG, Jablons DM, Gray JW. Massion PP, et al. Among authors: olshen ab. Cancer Res. 2002 Jul 1;62(13):3636-40. Cancer Res. 2002. PMID: 12097266

3

Array-based comparative genomic hybridization for genome-wide screening of DNA copy number in bladder tumors.

Veltman JA, Fridlyand J, Pejavar S, Olshen AB, Korkola JE, DeVries S, Carroll P, Kuo WL, Pinkel D, Albertson D, Cordon-Cardo C, Jain AN, Waldman FM. Veltman JA, et al. Among authors: olshen ab. Cancer Res. 2003 Jun 1;63(11):2872-80. Cancer Res. 2003. PMID: 12782593

4

Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation.

Lucito R, Healy J, Alexander J, Reiner A, Esposito D, Chi M, Rodgers L, Brady A, Sebat J, Troge J, West JA, Rostan S, Nguyen KC, Powers S, Ye KQ, Olshen A, Venkatraman E, Norton L, Wigler M. Lucito R, et al. Genome Res. 2003 Oct;13(10):2291-305. doi: 10.1101/gr.1349003. Epub 2003 Sep 15. Genome Res. 2003. PMID: 12975311 Free PMC article.

5

Classifying melanocytic tumors based on DNA copy number changes.

Bastian BC, Olshen AB, LeBoit PE, Pinkel D. Bastian BC, et al. Among authors: olshen ab. Am J Pathol. 2003 Nov;163(5):1765-70. doi: 10.1016/S0002-9440(10)63536-5. Am J Pathol. 2003. PMID: 14578177 Free PMC article.

6

Breast tumor copy number aberration phenotypes and genomic instability.

Fridlyand J, Snijders AM, Ylstra B, Li H, Olshen A, Segraves R, Dairkee S, Tokuyasu T, Ljung BM, Jain AN, McLennan J, Ziegler J, Chin K, Devries S, Feiler H, Gray JW, Waldman F, Pinkel D, Albertson DG. Fridlyand J, et al. BMC Cancer. 2006 Apr 18;6:96. doi: 10.1186/1471-2407-6-96. BMC Cancer. 2006. PMID: 16620391 Free PMC article.

7

A metastasis or a second independent cancer? Evaluating the clonal origin of tumors using array copy number data.

Ostrovnaya I, Olshen AB, Seshan VE, Orlow I, Albertson DG, Begg CB. Ostrovnaya I, et al. Among authors: olshen ab. Stat Med. 2010 Jul 10;29(15):1608-21. doi: 10.1002/sim.3866. Stat Med. 2010. PMID: 20205270 Free PMC article.

8

Copy number and gene expression differences between African American and Caucasian American prostate cancer.

Rose AE, Satagopan JM, Oddoux C, Zhou Q, Xu R, Olshen AB, Yu JZ, Dash A, Jean-Gilles J, Reuter V, Gerald WL, Lee P, Osman I. Rose AE, et al. Among authors: olshen ab. J Transl Med. 2010 Jul 22;8:70. doi: 10.1186/1479-5876-8-70. J Transl Med. 2010. PMID: 20649978 Free PMC article.

9

Parent-specific copy number in paired tumor-normal studies using circular binary segmentation.

Olshen AB, Bengtsson H, Neuvial P, Spellman PT, Olshen RA, Seshan VE. Olshen AB, et al. Among authors: olshen ra. Bioinformatics. 2011 Aug 1;27(15):2038-46. doi: 10.1093/bioinformatics/btr329. Epub 2011 Jun 11. Bioinformatics. 2011. PMID: 21666266 Free PMC article.

10

Two distinct routes to oral cancer differing in genome instability and risk for cervical node metastasis.

Bhattacharya A, Roy R, Snijders AM, Hamilton G, Paquette J, Tokuyasu T, Bengtsson H, Jordan RC, Olshen AB, Pinkel D, Schmidt BL, Albertson DG. Bhattacharya A, et al. Among authors: olshen ab. Clin Cancer Res. 2011 Nov 15;17(22):7024-34. doi: 10.1158/1078-0432.CCR-11-1944. Epub 2011 Nov 8. Clin Cancer Res. 2011. PMID: 22068658 Free PMC article.

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