Sayyed-Ahmad A - Search Results

1

Investigation of Changes in Tetracycline Repressor Binding upon Mutations in the Tetracycline Operator.

Bolintineanu DS, Volzing K, Vivcharuk V, Sayyed-Ahmad A, Srivastava P, Kaznessis YN. Bolintineanu DS, et al. J Chem Eng Data. 2014 Oct 9;59(10):3167-3176. doi: 10.1021/je500225x. Epub 2014 Aug 11. J Chem Eng Data. 2014. PMID: 25308994 Free PMC article.

2

Poisson-Nernst-Planck models of nonequilibrium ion electrodiffusion through a protegrin transmembrane pore.

Bolintineanu DS, Sayyed-Ahmad A, Davis HT, Kaznessis YN. Bolintineanu DS, et al. PLoS Comput Biol. 2009 Jan;5(1):e1000277. doi: 10.1371/journal.pcbi.1000277. Epub 2009 Jan 30. PLoS Comput Biol. 2009. PMID: 19180178 Free PMC article.

3

Determining the orientation of protegrin-1 in DLPC bilayers using an implicit solvent-membrane model.

Sayyed-Ahmad A, Kaznessis YN. Sayyed-Ahmad A, et al. PLoS One. 2009;4(3):e4799. doi: 10.1371/journal.pone.0004799. Epub 2009 Mar 11. PLoS One. 2009. PMID: 19277199 Free PMC article.

4

Relative free energy of binding between antimicrobial peptides and SDS or DPC micelles.

Sayyed-Ahmad A, Khandelia H, Kaznessis YN. Sayyed-Ahmad A, et al. Mol Simul. 2009 Sep;35(10-11):986-997. doi: 10.1080/08927020902902742. Mol Simul. 2009. PMID: 21113423 Free PMC article.

5

pMD-Membrane: A Method for Ligand Binding Site Identification in Membrane-Bound Proteins.

Prakash P, Sayyed-Ahmad A, Gorfe AA. Prakash P, et al. PLoS Comput Biol. 2015 Oct 27;11(10):e1004469. doi: 10.1371/journal.pcbi.1004469. eCollection 2015 Oct. PLoS Comput Biol. 2015. PMID: 26506102 Free PMC article.

6

Computational Equilibrium Thermodynamic and Kinetic Analysis of K-Ras Dimerization through an Effector Binding Surface Suggests Limited Functional Role.

Sayyed-Ahmad A, Cho KJ, Hancock JF, Gorfe AA. Sayyed-Ahmad A, et al. J Phys Chem B. 2016 Aug 25;120(33):8547-56. doi: 10.1021/acs.jpcb.6b02403. Epub 2016 May 11. J Phys Chem B. 2016. PMID: 27072779 Free PMC article.

7

The role of conserved waters in conformational transitions of Q61H K-ras.

Prakash P, Sayyed-Ahmad A, Gorfe AA. Prakash P, et al. PLoS Comput Biol. 2012;8(2):e1002394. doi: 10.1371/journal.pcbi.1002394. Epub 2012 Feb 16. PLoS Comput Biol. 2012. PMID: 22359497 Free PMC article.

8

Efficient solution technique for solving the Poisson-Boltzmann equation.

Sayyed-Ahmad A, Tuncay K, Ortoleva PJ. Sayyed-Ahmad A, et al. J Comput Chem. 2004 Jun;25(8):1068-74. doi: 10.1002/jcc.20039. J Comput Chem. 2004. PMID: 15067682

9

Computational and biochemical characterization of two partially overlapping interfaces and multiple weak-affinity K-Ras dimers.

Prakash P, Sayyed-Ahmad A, Cho KJ, Dolino DM, Chen W, Li H, Grant BJ, Hancock JF, Gorfe AA. Prakash P, et al. Sci Rep. 2017 Jan 9;7:40109. doi: 10.1038/srep40109. Sci Rep. 2017. PMID: 28067274 Free PMC article.

10

Distinct dynamics and interaction patterns in H- and K-Ras oncogenic P-loop mutants.

Sayyed-Ahmad A, Prakash P, Gorfe AA. Sayyed-Ahmad A, et al. Proteins. 2017 Sep;85(9):1618-1632. doi: 10.1002/prot.25317. Epub 2017 May 31. Proteins. 2017. PMID: 28498561 Free PMC article.

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