Califano A - Search Results

1

Inferring protein modulation from gene expression data using conditional mutual information.

Giorgi FM, Lopez G, Woo JH, Bisikirska B, Califano A, Bansal M. Giorgi FM, et al. Among authors: califano a. PLoS One. 2014 Oct 14;9(10):e109569. doi: 10.1371/journal.pone.0109569. eCollection 2014. PLoS One. 2014. PMID: 25314274 Free PMC article.

2

Reverse engineering cellular networks.

Margolin AA, Wang K, Lim WK, Kustagi M, Nemenman I, Califano A. Margolin AA, et al. Among authors: califano a. Nat Protoc. 2006;1(2):662-71. doi: 10.1038/nprot.2006.106. Nat Protoc. 2006. PMID: 17406294

3

Dissecting the interface between signaling and transcriptional regulation in human B cells.

Wang K, Alvarez MJ, Bisikirska BC, Linding R, Basso K, Dalla Favera R, Califano A. Wang K, et al. Among authors: califano a. Pac Symp Biocomput. 2009:264-75. Pac Symp Biocomput. 2009. PMID: 19209707 Free PMC article.

4

Genome-wide identification of post-translational modulators of transcription factor activity in human B cells.

Wang K, Saito M, Bisikirska BC, Alvarez MJ, Lim WK, Rajbhandari P, Shen Q, Nemenman I, Basso K, Margolin AA, Klein U, Dalla-Favera R, Califano A. Wang K, et al. Among authors: califano a. Nat Biotechnol. 2009 Sep;27(9):829-39. doi: 10.1038/nbt.1563. Epub 2009 Sep 9. Nat Biotechnol. 2009. PMID: 19741643 Free PMC article.

5

A systems biology approach to transcription factor binding site prediction.

Zhou X, Sumazin P, Rajbhandari P, Califano A. Zhou X, et al. Among authors: califano a. PLoS One. 2010 Mar 26;5(3):e9878. doi: 10.1371/journal.pone.0009878. PLoS One. 2010. PMID: 20360861 Free PMC article.

6

Drawing networks of rejection - a systems biological approach to the identification of candidate genes in heart transplantation.

Cadeiras M, von Bayern M, Sinha A, Shahzad K, Latif F, Lim WK, Grenett H, Tabak E, Klingler T, Califano A, Deng MC. Cadeiras M, et al. Among authors: califano a. J Cell Mol Med. 2011 Apr;15(4):949-56. doi: 10.1111/j.1582-4934.2010.01092.x. J Cell Mol Med. 2011. PMID: 20497491 Free PMC article.

7

A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers.

Lefebvre C, Rajbhandari P, Alvarez MJ, Bandaru P, Lim WK, Sato M, Wang K, Sumazin P, Kustagi M, Bisikirska BC, Basso K, Beltrao P, Krogan N, Gautier J, Dalla-Favera R, Califano A. Lefebvre C, et al. Among authors: califano a. Mol Syst Biol. 2010 Jun 8;6:377. doi: 10.1038/msb.2010.31. Mol Syst Biol. 2010. PMID: 20531406 Free PMC article.

8

Genome-wide dissection of posttranscriptional and posttranslational interactions.

Bansal M, Califano A. Bansal M, et al. Among authors: califano a. Methods Mol Biol. 2012;786:131-49. doi: 10.1007/978-1-61779-292-2_8. Methods Mol Biol. 2012. PMID: 21938624

9

An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma.

Sumazin P, Yang X, Chiu HS, Chung WJ, Iyer A, Llobet-Navas D, Rajbhandari P, Bansal M, Guarnieri P, Silva J, Califano A. Sumazin P, et al. Among authors: califano a. Cell. 2011 Oct 14;147(2):370-81. doi: 10.1016/j.cell.2011.09.041. Cell. 2011. PMID: 22000015 Free PMC article.

10

Reverse-engineering human regulatory networks.

Lefebvre C, Rieckhof G, Califano A. Lefebvre C, et al. Among authors: califano a. Wiley Interdiscip Rev Syst Biol Med. 2012 Jul-Aug;4(4):311-25. doi: 10.1002/wsbm.1159. Epub 2012 Jan 13. Wiley Interdiscip Rev Syst Biol Med. 2012. PMID: 22246697 Free PMC article. Review.

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