Caccamo M - Search Results

1

RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat.

Ramirez-Gonzalez RH, Segovia V, Bird N, Fenwick P, Holdgate S, Berry S, Jack P, Caccamo M, Uauy C. Ramirez-Gonzalez RH, et al. Among authors: caccamo m. Plant Biotechnol J. 2015 Jun;13(5):613-24. doi: 10.1111/pbi.12281. Epub 2014 Nov 8. Plant Biotechnol J. 2015. PMID: 25382230 Free article.

2

Advances in bacterial transcriptome and transposon insertion-site profiling using second-generation sequencing.

Febrer M, McLay K, Caccamo M, Twomey KB, Ryan RP. Febrer M, et al. Among authors: caccamo m. Trends Biotechnol. 2011 Nov;29(11):586-94. doi: 10.1016/j.tibtech.2011.06.004. Epub 2011 Jul 20. Trends Biotechnol. 2011. PMID: 21764162 Review.

3

Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data.

Ramirez-Gonzalez R, Caccamo M, MacLean D. Ramirez-Gonzalez R, et al. Among authors: caccamo m. Bioinformatics. 2011 Oct 1;27(19):2754-5. doi: 10.1093/bioinformatics/btr442. Epub 2011 Jul 29. Bioinformatics. 2011. PMID: 21803806

4

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments.

Ramirez-Gonzalez RH, Bonnal R, Caccamo M, Maclean D. Ramirez-Gonzalez RH, et al. Among authors: caccamo m. Source Code Biol Med. 2012 May 28;7(1):6. doi: 10.1186/1751-0473-7-6. Source Code Biol Med. 2012. PMID: 22640879 Free PMC article.

5

Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs.

Murcia PR, Hughes J, Battista P, Lloyd L, Baillie GJ, Ramirez-Gonzalez RH, Ormond D, Oliver K, Elton D, Mumford JA, Caccamo M, Kellam P, Grenfell BT, Holmes EC, Wood JL. Murcia PR, et al. Among authors: caccamo m. PLoS Pathog. 2012;8(5):e1002730. doi: 10.1371/journal.ppat.1002730. Epub 2012 May 31. PLoS Pathog. 2012. PMID: 22693449 Free PMC article.

6

PyroClean: denoising pyrosequences from protein-coding amplicons for the recovery of interspecific and intraspecific genetic variation.

Ramirez-Gonzalez R, Yu DW, Bruce C, Heavens D, Caccamo M, Emerson BC. Ramirez-Gonzalez R, et al. Among authors: caccamo m. PLoS One. 2013;8(3):e57615. doi: 10.1371/journal.pone.0057615. Epub 2013 Mar 1. PLoS One. 2013. PMID: 23469211 Free PMC article.

7

Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.

Leggett RM, Ramirez-Gonzalez RH, Verweij W, Kawashima CG, Iqbal Z, Jones JD, Caccamo M, Maclean D. Leggett RM, et al. Among authors: caccamo m. PLoS One. 2013;8(3):e60058. doi: 10.1371/journal.pone.0060058. Epub 2013 Mar 25. PLoS One. 2013. PMID: 23536903 Free PMC article.

8

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics.

Ramirez-Gonzalez RH, Leggett RM, Waite D, Thanki A, Drou N, Caccamo M, Davey R. Ramirez-Gonzalez RH, et al. Among authors: caccamo m. F1000Res. 2013 Nov 15;2:248. doi: 10.12688/f1000research.2-248.v2. eCollection 2013. F1000Res. 2013. PMID: 24627795 Free PMC article.

9

PolyMarker: A fast polyploid primer design pipeline.

Ramirez-Gonzalez RH, Uauy C, Caccamo M. Ramirez-Gonzalez RH, et al. Among authors: caccamo m. Bioinformatics. 2015 Jun 15;31(12):2038-9. doi: 10.1093/bioinformatics/btv069. Epub 2015 Feb 2. Bioinformatics. 2015. PMID: 25649618 Free PMC article.

10

Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data.

Daly GM, Leggett RM, Rowe W, Stubbs S, Wilkinson M, Ramirez-Gonzalez RH, Caccamo M, Bernal W, Heeney JL. Daly GM, et al. Among authors: caccamo m. PLoS One. 2015 Jun 22;10(6):e0129059. doi: 10.1371/journal.pone.0129059. eCollection 2015. PLoS One. 2015. PMID: 26098299 Free PMC article.

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