Ramirez-Gonzalez RH - Search Results

1

RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat.

Ramirez-Gonzalez RH, Segovia V, Bird N, Fenwick P, Holdgate S, Berry S, Jack P, Caccamo M, Uauy C. Ramirez-Gonzalez RH, et al. Plant Biotechnol J. 2015 Jun;13(5):613-24. doi: 10.1111/pbi.12281. Epub 2014 Nov 8. Plant Biotechnol J. 2015. PMID: 25382230 Free article.

2

Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data.

Ramirez-Gonzalez R, Caccamo M, MacLean D. Ramirez-Gonzalez R, et al. Bioinformatics. 2011 Oct 1;27(19):2754-5. doi: 10.1093/bioinformatics/btr442. Epub 2011 Jul 29. Bioinformatics. 2011. PMID: 21803806

3

Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments.

Ramirez-Gonzalez RH, Bonnal R, Caccamo M, Maclean D. Ramirez-Gonzalez RH, et al. Source Code Biol Med. 2012 May 28;7(1):6. doi: 10.1186/1751-0473-7-6. Source Code Biol Med. 2012. PMID: 22640879 Free PMC article.

4

PyroClean: denoising pyrosequences from protein-coding amplicons for the recovery of interspecific and intraspecific genetic variation.

Ramirez-Gonzalez R, Yu DW, Bruce C, Heavens D, Caccamo M, Emerson BC. Ramirez-Gonzalez R, et al. PLoS One. 2013;8(3):e57615. doi: 10.1371/journal.pone.0057615. Epub 2013 Mar 1. PLoS One. 2013. PMID: 23469211 Free PMC article.

5

Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.

Leggett RM, Ramirez-Gonzalez RH, Verweij W, Kawashima CG, Iqbal Z, Jones JD, Caccamo M, Maclean D. Leggett RM, et al. PLoS One. 2013;8(3):e60058. doi: 10.1371/journal.pone.0060058. Epub 2013 Mar 25. PLoS One. 2013. PMID: 23536903 Free PMC article.

6

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics.

Ramirez-Gonzalez RH, Leggett RM, Waite D, Thanki A, Drou N, Caccamo M, Davey R. Ramirez-Gonzalez RH, et al. F1000Res. 2013 Nov 15;2:248. doi: 10.12688/f1000research.2-248.v2. eCollection 2013. F1000Res. 2013. PMID: 24627795 Free PMC article.

7

Genome interplay in the grain transcriptome of hexaploid bread wheat.

Pfeifer M, Kugler KG, Sandve SR, Zhan B, Rudi H, Hvidsten TR; International Wheat Genome Sequencing Consortium; Mayer KF, Olsen OA. Pfeifer M, et al. Science. 2014 Jul 18;345(6194):1250091. doi: 10.1126/science.1250091. Science. 2014. PMID: 25035498 Free article.

8

Ancient hybridizations among the ancestral genomes of bread wheat.

Marcussen T, Sandve SR, Heier L, Spannagl M, Pfeifer M; International Wheat Genome Sequencing Consortium,; Jakobsen KS, Wulff BB, Steuernagel B, Mayer KF, Olsen OA. Marcussen T, et al. Science. 2014 Jul 18;345(6194):1250092. doi: 10.1126/science.1250092. Science. 2014. PMID: 25035499

9

PolyMarker: A fast polyploid primer design pipeline.

Ramirez-Gonzalez RH, Uauy C, Caccamo M. Ramirez-Gonzalez RH, et al. Bioinformatics. 2015 Jun 15;31(12):2038-9. doi: 10.1093/bioinformatics/btv069. Epub 2015 Feb 2. Bioinformatics. 2015. PMID: 25649618 Free PMC article.

10

Field pathogenomics reveals the emergence of a diverse wheat yellow rust population.

Hubbard A, Lewis CM, Yoshida K, Ramirez-Gonzalez RH, de Vallavieille-Pope C, Thomas J, Kamoun S, Bayles R, Uauy C, Saunders DG. Hubbard A, et al. Genome Biol. 2015 Feb 25;16(1):23. doi: 10.1186/s13059-015-0590-8. Genome Biol. 2015. PMID: 25723868 Free PMC article.

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