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Page 1
Structure and dynamics of oligonucleotides in the gas phase.
Arcella A, Dreyer J, Ippoliti E, Ivani I, Portella G, Gabelica V, Carloni P, Orozco M. Arcella A, et al. Among authors: ivani i. Angew Chem Int Ed Engl. 2015 Jan 7;54(2):467-71. doi: 10.1002/anie.201406910. Epub 2014 Nov 21. Angew Chem Int Ed Engl. 2015. PMID: 25417598
How accurate are accurate force-fields for B-DNA?
Dans PD, Ivani I, Hospital A, Portella G, González C, Orozco M. Dans PD, et al. Among authors: ivani i. Nucleic Acids Res. 2017 Apr 20;45(7):4217-4230. doi: 10.1093/nar/gkw1355. Nucleic Acids Res. 2017. PMID: 28088759 Free PMC article.
The structural impact of DNA mismatches.
Rossetti G, Dans PD, Gomez-Pinto I, Ivani I, Gonzalez C, Orozco M. Rossetti G, et al. Among authors: ivani i. Nucleic Acids Res. 2015 Apr 30;43(8):4309-21. doi: 10.1093/nar/gkv254. Epub 2015 Mar 27. Nucleic Acids Res. 2015. PMID: 25820425 Free PMC article.
Parmbsc1: a refined force field for DNA simulations.
Ivani I, Dans PD, Noy A, Pérez A, Faustino I, Hospital A, Walther J, Andrio P, Goñi R, Balaceanu A, Portella G, Battistini F, Gelpí JL, González C, Vendruscolo M, Laughton CA, Harris SA, Case DA, Orozco M. Ivani I, et al. Nat Methods. 2016 Jan;13(1):55-8. doi: 10.1038/nmeth.3658. Epub 2015 Nov 16. Nat Methods. 2016. PMID: 26569599 Free PMC article.
Long-timescale dynamics of the Drew-Dickerson dodecamer.
Dans PD, Danilāne L, Ivani I, Dršata T, Lankaš F, Hospital A, Walther J, Pujagut RI, Battistini F, Gelpí JL, Lavery R, Orozco M. Dans PD, et al. Among authors: ivani i. Nucleic Acids Res. 2016 May 19;44(9):4052-66. doi: 10.1093/nar/gkw264. Epub 2016 Apr 15. Nucleic Acids Res. 2016. PMID: 27084952 Free PMC article.