Habermann BH - Search Results

1

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.

Villaveces JM, Jiménez RC, Porras P, Del-Toro N, Duesbury M, Dumousseau M, Orchard S, Choi H, Ping P, Zong NC, Askenazi M, Habermann BH, Hermjakob H. Villaveces JM, et al. Among authors: habermann bh. Database (Oxford). 2015 Feb 4;2015:bau131. doi: 10.1093/database/bau131. Print 2015. Database (Oxford). 2015. PMID: 25652942 Free PMC article.

2

KEGGViewer, a BioJS component to visualize KEGG Pathways.

Villaveces JM, Jimenez RC, Habermann BH. Villaveces JM, et al. Among authors: habermann bh. F1000Res. 2014 Feb 13;3:43. doi: 10.12688/f1000research.3-43.v1. eCollection 2014. F1000Res. 2014. PMID: 24715980 Free PMC article.

3

PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers.

Villaveces JM, Jimenez RC, Habermann BH. Villaveces JM, et al. Among authors: habermann bh. F1000Res. 2014 Feb 13;3:44. doi: 10.12688/f1000research.3-44.v1. eCollection 2014. F1000Res. 2014. PMID: 25075287 Free PMC article.

4

morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring.

Wagner I, Volkmer M, Sharan M, Villaveces JM, Oswald F, Surendranath V, Habermann BH. Wagner I, et al. Among authors: habermann bh. BMC Bioinformatics. 2014 Aug 6;15(1):263. doi: 10.1186/1471-2105-15-263. BMC Bioinformatics. 2014. PMID: 25096057 Free PMC article.

5

Tools for visualization and analysis of molecular networks, pathways, and -omics data.

Villaveces JM, Koti P, Habermann BH. Villaveces JM, et al. Among authors: habermann bh. Adv Appl Bioinform Chem. 2015 Jun 4;8:11-22. doi: 10.2147/AABC.S63534. eCollection 2015. Adv Appl Bioinform Chem. 2015. PMID: 26082651 Free PMC article. Review.

6

High-resolution TADs reveal DNA sequences underlying genome organization in flies.

Ramírez F, Bhardwaj V, Arrigoni L, Lam KC, Grüning BA, Villaveces J, Habermann B, Akhtar A, Manke T. Ramírez F, et al. Nat Commun. 2018 Jan 15;9(1):189. doi: 10.1038/s41467-017-02525-w. Nat Commun. 2018. PMID: 29335486 Free PMC article.

7

Molecular strategies of the Caenorhabditis elegans dauer larva to survive extreme desiccation.

Erkut C, Vasilj A, Boland S, Habermann B, Shevchenko A, Kurzchalia TV. Erkut C, et al. PLoS One. 2013 Dec 4;8(12):e82473. doi: 10.1371/journal.pone.0082473. eCollection 2013. PLoS One. 2013. PMID: 24324795 Free PMC article.

8

mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations.

Yim A, Koti P, Bonnard A, Marchiano F, Dürrbaum M, Garcia-Perez C, Villaveces J, Gamal S, Cardone G, Perocchi F, Storchova Z, Habermann BH. Yim A, et al. Among authors: habermann bh. Nucleic Acids Res. 2020 Jan 24;48(2):605-632. doi: 10.1093/nar/gkz1128. Nucleic Acids Res. 2020. PMID: 31799603 Free PMC article.

9

MechanoProDB: a web-based database for exploring the mechanical properties of proteins.

Mesbah I, Habermann B, Rico F. Mesbah I, et al. Database (Oxford). 2024 Jun 5;2024:baae047. doi: 10.1093/database/baae047. Database (Oxford). 2024. PMID: 38837788 Free PMC article.

10

HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition.

Bradshaw CR, Surendranath V, Henschel R, Mueller MS, Habermann BH. Bradshaw CR, et al. Among authors: habermann bh. PLoS One. 2011 Mar 10;6(3):e17568. doi: 10.1371/journal.pone.0017568. PLoS One. 2011. PMID: 21423752 Free PMC article.

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