Kojima K - Search Results

1

Estimating copy numbers of alleles from population-scale high-throughput sequencing data.

Mimori T, Nariai N, Kojima K, Sato Y, Kawai Y, Yamaguchi-Kabata Y, Nagasaki M. Mimori T, et al. Among authors: kojima k. BMC Bioinformatics. 2015;16 Suppl 1(Suppl 1):S4. doi: 10.1186/1471-2105-16-S1-S4. Epub 2015 Jan 21. BMC Bioinformatics. 2015. PMID: 25707811 Free PMC article.

2

An efficient grid layout algorithm for biological networks utilizing various biological attributes.

Kojima K, Nagasaki M, Jeong E, Kato M, Miyano S. Kojima K, et al. BMC Bioinformatics. 2007 Mar 6;8:76. doi: 10.1186/1471-2105-8-76. BMC Bioinformatics. 2007. PMID: 17338825 Free PMC article.

3

Fast grid layout algorithm for biological networks with sweep calculation.

Kojima K, Nagasaki M, Miyano S. Kojima K, et al. Bioinformatics. 2008 Jun 15;24(12):1433-41. doi: 10.1093/bioinformatics/btn196. Epub 2008 Apr 18. Bioinformatics. 2008. PMID: 18424458

4

BFL: a node and edge betweenness based fast layout algorithm for large scale networks.

Hashimoto TB, Nagasaki M, Kojima K, Miyano S. Hashimoto TB, et al. Among authors: kojima k. BMC Bioinformatics. 2009 Jan 15;10:19. doi: 10.1186/1471-2105-10-19. BMC Bioinformatics. 2009. PMID: 19146673 Free PMC article.

5

An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information.

Kojima K, Nagasaki M, Miyano S. Kojima K, et al. BMC Bioinformatics. 2010 Jun 18;11:335. doi: 10.1186/1471-2105-11-335. BMC Bioinformatics. 2010. PMID: 20565884 Free PMC article.

6

Gene regulatory network clustering for graph layout based on microarray gene expression data.

Kojima K, Imoto S, Nagasaki M, Miyano S. Kojima K, et al. Genome Inform. 2010;24:84-95. Genome Inform. 2010. PMID: 22081591 Free article.

7

TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.

Nariai N, Hirose O, Kojima K, Nagasaki M. Nariai N, et al. Among authors: kojima k. Bioinformatics. 2013 Sep 15;29(18):2292-9. doi: 10.1093/bioinformatics/btt381. Epub 2013 Jul 2. Bioinformatics. 2013. PMID: 23821651

8

A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.

Kojima K, Nariai N, Mimori T, Takahashi M, Yamaguchi-Kabata Y, Sato Y, Nagasaki M. Kojima K, et al. Bioinformatics. 2013 Nov 15;29(22):2835-43. doi: 10.1093/bioinformatics/btt503. Epub 2013 Sep 3. Bioinformatics. 2013. PMID: 24002111

9

iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data.

Mimori T, Nariai N, Kojima K, Takahashi M, Ono A, Sato Y, Yamaguchi-Kabata Y, Nagasaki M. Mimori T, et al. Among authors: kojima k. BMC Syst Biol. 2013;7 Suppl 6(Suppl 6):S8. doi: 10.1186/1752-0509-7-S6-S8. Epub 2013 Dec 13. BMC Syst Biol. 2013. PMID: 24564972 Free PMC article.

10

Identification of acquired mutations by whole-genome sequencing in GATA-2 deficiency evolving into myelodysplasia and acute leukemia.

Fujiwara T, Fukuhara N, Funayama R, Nariai N, Kamata M, Nagashima T, Kojima K, Onishi Y, Sasahara Y, Ishizawa K, Nagasaki M, Nakayama K, Harigae H. Fujiwara T, et al. Among authors: kojima k. Ann Hematol. 2014 Sep;93(9):1515-22. doi: 10.1007/s00277-014-2090-4. Epub 2014 Apr 30. Ann Hematol. 2014. PMID: 24782121 Free PMC article.

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