Marti-Renom MA - Search Results

1

Assessing the limits of restraint-based 3D modeling of genomes and genomic domains.

Trussart M, Serra F, Baù D, Junier I, Serrano L, Marti-Renom MA. Trussart M, et al. Nucleic Acids Res. 2015 Apr 20;43(7):3465-77. doi: 10.1093/nar/gkv221. Epub 2015 Mar 23. Nucleic Acids Res. 2015. PMID: 25800747 Free PMC article.

2

The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.

Baù D, Sanyal A, Lajoie BR, Capriotti E, Byron M, Lawrence JB, Dekker J, Marti-Renom MA. Baù D, et al. Nat Struct Mol Biol. 2011 Jan;18(1):107-14. doi: 10.1038/nsmb.1936. Epub 2010 Dec 5. Nat Struct Mol Biol. 2011. PMID: 21131981 Free PMC article.

3

Structure determination of genomic domains by satisfaction of spatial restraints.

Baù D, Marti-Renom MA. Baù D, et al. Chromosome Res. 2011 Jan;19(1):25-35. doi: 10.1007/s10577-010-9167-2. Chromosome Res. 2011. PMID: 21190133 Review.

4

Chromatin globules: a common motif of higher order chromosome structure?

Sanyal A, Baù D, Martí-Renom MA, Dekker J. Sanyal A, et al. Curr Opin Cell Biol. 2011 Jun;23(3):325-31. doi: 10.1016/j.ceb.2011.03.009. Epub 2011 Apr 12. Curr Opin Cell Biol. 2011. PMID: 21489772 Free PMC article. Review.

5

Bridging the resolution gap in structural modeling of 3D genome organization.

Marti-Renom MA, Mirny LA. Marti-Renom MA, et al. PLoS Comput Biol. 2011 Jul;7(7):e1002125. doi: 10.1371/journal.pcbi.1002125. Epub 2011 Jul 14. PLoS Comput Biol. 2011. PMID: 21779160 Free PMC article. Review.

6

The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation.

Umbarger MA, Toro E, Wright MA, Porreca GJ, Baù D, Hong SH, Fero MJ, Zhu LJ, Marti-Renom MA, McAdams HH, Shapiro L, Dekker J, Church GM. Umbarger MA, et al. Mol Cell. 2011 Oct 21;44(2):252-64. doi: 10.1016/j.molcel.2011.09.010. Mol Cell. 2011. PMID: 22017872 Free PMC article.

7

Genome structure determination via 3C-based data integration by the Integrative Modeling Platform.

Baù D, Marti-Renom MA. Baù D, et al. Methods. 2012 Nov;58(3):300-6. doi: 10.1016/j.ymeth.2012.04.004. Epub 2012 Apr 13. Methods. 2012. PMID: 22522224 Review.

8

Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation.

Le Dily F, Baù D, Pohl A, Vicent GP, Serra F, Soronellas D, Castellano G, Wright RH, Ballare C, Filion G, Marti-Renom MA, Beato M. Le Dily F, et al. Genes Dev. 2014 Oct 1;28(19):2151-62. doi: 10.1101/gad.241422.114. Genes Dev. 2014. PMID: 25274727 Free PMC article.

9

Restraint-based three-dimensional modeling of genomes and genomic domains.

Serra F, Di Stefano M, Spill YG, Cuartero Y, Goodstadt M, Baù D, Marti-Renom MA. Serra F, et al. FEBS Lett. 2015 Oct 7;589(20 Pt A):2987-95. doi: 10.1016/j.febslet.2015.05.012. Epub 2015 May 14. FEBS Lett. 2015. PMID: 25980604 Free article. Review.

10

On the demultiplexing of chromosome capture conformation data.

Junier I, Spill YG, Marti-Renom MA, Beato M, le Dily F. Junier I, et al. FEBS Lett. 2015 Oct 7;589(20 Pt A):3005-13. doi: 10.1016/j.febslet.2015.05.049. Epub 2015 Jun 6. FEBS Lett. 2015. PMID: 26054977 Free article. Review.

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