Farrell JA - Search Results

1

Spatial reconstruction of single-cell gene expression data.

Satija R, Farrell JA, Gennert D, Schier AF, Regev A. Satija R, et al. Among authors: farrell ja. Nat Biotechnol. 2015 May;33(5):495-502. doi: 10.1038/nbt.3192. Epub 2015 Apr 13. Nat Biotechnol. 2015. PMID: 25867923 Free PMC article.

2

Response to Nodal morphogen gradient is determined by the kinetics of target gene induction.

Dubrulle J, Jordan BM, Akhmetova L, Farrell JA, Kim SH, Solnica-Krezel L, Schier AF. Dubrulle J, et al. Among authors: farrell ja. Elife. 2015 Apr 14;4:e05042. doi: 10.7554/eLife.05042. Elife. 2015. PMID: 25869585 Free PMC article.

3

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis.

Farrell JA, Wang Y, Riesenfeld SJ, Shekhar K, Regev A, Schier AF. Farrell JA, et al. Science. 2018 Jun 1;360(6392):eaar3131. doi: 10.1126/science.aar3131. Epub 2018 Apr 26. Science. 2018. PMID: 29700225 Free PMC article.

4

Emergence of Neuronal Diversity during Vertebrate Brain Development.

Raj B, Farrell JA, Liu J, El Kholtei J, Carte AN, Navajas Acedo J, Du LY, McKenna A, Relić Đ, Leslie JM, Schier AF. Raj B, et al. Among authors: farrell ja. Neuron. 2020 Dec 23;108(6):1058-1074.e6. doi: 10.1016/j.neuron.2020.09.023. Epub 2020 Oct 16. Neuron. 2020. PMID: 33068532 Free PMC article.

5

Gene module reconstruction elucidates cellular differentiation processes and the regulatory logic of specialized secretion.

Wang Y, Liu J, Du LY, Wyss JL, Farrell JA, Schier AF. Wang Y, et al. Among authors: farrell ja. bioRxiv [Preprint]. 2023 Dec 29:2023.12.29.573643. doi: 10.1101/2023.12.29.573643. bioRxiv. 2023. Update in: Dev Cell. 2024 Nov 22:S1534-5807(24)00634-8. doi: 10.1016/j.devcel.2024.10.015 PMID: 38234833 Free PMC article. Updated. Preprint.

6

Cell-type-specific mRNA transcription and degradation kinetics in zebrafish embryogenesis from metabolically labeled single-cell RNA-seq.

Fishman L, Modak A, Nechooshtan G, Razin T, Erhard F, Regev A, Farrell JA, Rabani M. Fishman L, et al. Among authors: farrell ja. Nat Commun. 2024 Apr 10;15(1):3104. doi: 10.1038/s41467-024-47290-9. Nat Commun. 2024. PMID: 38600066 Free PMC article.

7

From egg to gastrula: how the cell cycle is remodeled during the Drosophila mid-blastula transition.

Farrell JA, O'Farrell PH. Farrell JA, et al. Annu Rev Genet. 2014;48:269-94. doi: 10.1146/annurev-genet-111212-133531. Epub 2014 Sep 5. Annu Rev Genet. 2014. PMID: 25195504 Free PMC article. Review.

8

Stem cell differentiation trajectories in Hydra resolved at single-cell resolution.

Siebert S, Farrell JA, Cazet JF, Abeykoon Y, Primack AS, Schnitzler CE, Juliano CE. Siebert S, et al. Among authors: farrell ja. Science. 2019 Jul 26;365(6451):eaav9314. doi: 10.1126/science.aav9314. Science. 2019. PMID: 31346039 Free PMC article.

9

Influence of cyclin type and dose on mitotic entry and progression in the early Drosophila embryo.

McCleland ML, Farrell JA, O'Farrell PH. McCleland ML, et al. Among authors: farrell ja. J Cell Biol. 2009 Mar 9;184(5):639-46. doi: 10.1083/jcb.200810012. J Cell Biol. 2009. PMID: 19273612 Free PMC article.

10

Embryonic onset of late replication requires Cdc25 down-regulation.

Farrell JA, Shermoen AW, Yuan K, O'Farrell PH. Farrell JA, et al. Genes Dev. 2012 Apr 1;26(7):714-25. doi: 10.1101/gad.186429.111. Epub 2012 Mar 19. Genes Dev. 2012. PMID: 22431511 Free PMC article.

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