Yada T - Search Results

1

Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance.

Maekawa S, Imamachi N, Irie T, Tani H, Matsumoto K, Mizutani R, Imamura K, Kakeda M, Yada T, Sugano S, Suzuki Y, Akimitsu N. Maekawa S, et al. Among authors: yada t. BMC Genomics. 2015 Mar 6;16(1):154. doi: 10.1186/s12864-015-1358-y. BMC Genomics. 2015. PMID: 25879614 Free PMC article.

2

Predicting promoter activities of primary human DNA sequences.

Irie T, Park SJ, Yamashita R, Seki M, Yada T, Sugano S, Nakai K, Suzuki Y. Irie T, et al. Among authors: yada t. Nucleic Acids Res. 2011 Jun;39(11):e75. doi: 10.1093/nar/gkr173. Epub 2011 Apr 12. Nucleic Acids Res. 2011. PMID: 21486745 Free PMC article.

3

Linear regression models predicting strength of transcriptional activity of promoters.

Yada T, Yoshida K, Morita M, Taniguchi T, Irie T, Suzuki Y. Yada T, et al. Genome Inform. 2011;25(1):53-60. Genome Inform. 2011. PMID: 22230939 Free article.

4

Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability.

Tani H, Imamachi N, Salam KA, Mizutani R, Ijiri K, Irie T, Yada T, Suzuki Y, Akimitsu N. Tani H, et al. Among authors: yada t. RNA Biol. 2012 Nov;9(11):1370-9. doi: 10.4161/rna.22360. Epub 2012 Oct 12. RNA Biol. 2012. PMID: 23064114 Free PMC article.

5

miRNA-target prediction based on transcriptional regulation.

Fujiwara T, Yada T. Fujiwara T, et al. Among authors: yada t. BMC Genomics. 2013;14 Suppl 2(Suppl 2):S3. doi: 10.1186/1471-2164-14-S2-S3. Epub 2013 Feb 15. BMC Genomics. 2013. PMID: 23445489 Free PMC article.

6

Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli.

Imamura K, Imamachi N, Akizuki G, Kumakura M, Kawaguchi A, Nagata K, Kato A, Kawaguchi Y, Sato H, Yoneda M, Kai C, Yada T, Suzuki Y, Yamada T, Ozawa T, Kaneki K, Inoue T, Kobayashi M, Kodama T, Wada Y, Sekimizu K, Akimitsu N. Imamura K, et al. Among authors: yada t. Mol Cell. 2014 Feb 6;53(3):393-406. doi: 10.1016/j.molcel.2014.01.009. Mol Cell. 2014. PMID: 24507715 Free article.

7

A new computational method to predict transcriptional activity of a DNA sequence from diverse datasets of massively parallel reporter assays.

Liu Y, Irie T, Yada T, Suzuki Y. Liu Y, et al. Among authors: yada t. Nucleic Acids Res. 2017 Jul 27;45(13):e124. doi: 10.1093/nar/gkx396. Nucleic Acids Res. 2017. PMID: 28531296 Free PMC article.

8

Identification of Minimal p53 Promoter Region Regulated by MALAT1 in Human Lung Adenocarcinoma Cells.

Tano K, Onoguchi-Mizutani R, Yeasmin F, Uchiumi F, Suzuki Y, Yada T, Akimitsu N. Tano K, et al. Among authors: yada t. Front Genet. 2018 Mar 26;8:208. doi: 10.3389/fgene.2017.00208. eCollection 2017. Front Genet. 2018. PMID: 29632545 Free PMC article.

9

Micropeptides Encoded in Transcripts Previously Identified as Long Noncoding RNAs: A New Chapter in Transcriptomics and Proteomics.

Yeasmin F, Yada T, Akimitsu N. Yeasmin F, et al. Among authors: yada t. Front Genet. 2018 Apr 25;9:144. doi: 10.3389/fgene.2018.00144. eCollection 2018. Front Genet. 2018. PMID: 29922328 Free PMC article. Review.

10

Identification and analysis of short open reading frames (sORFs) in the initially annotated noncoding RNA LINC00493 from human cells.

Yeasmin F, Imamachi N, Tanu T, Taniue K, Kawamura T, Yada T, Akimitsu N. Yeasmin F, et al. Among authors: yada t. J Biochem. 2021 Apr 29;169(4):421-434. doi: 10.1093/jb/mvaa143. J Biochem. 2021. PMID: 33386847

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