De S - Search Results

1

Signatures of accelerated somatic evolution in gene promoters in multiple cancer types.

Smith KS, Yadav VK, Pedersen BS, Shaknovich R, Geraci MW, Pollard KS, De S. Smith KS, et al. Among authors: de s. Nucleic Acids Res. 2015 Jun 23;43(11):5307-17. doi: 10.1093/nar/gkv419. Epub 2015 May 1. Nucleic Acids Res. 2015. PMID: 25934800 Free PMC article.

2

DNA methyltransferase 1 and DNA methylation patterning contribute to germinal center B-cell differentiation.

Shaknovich R, Cerchietti L, Tsikitas L, Kormaksson M, De S, Figueroa ME, Ballon G, Yang SN, Weinhold N, Reimers M, Clozel T, Luttrop K, Ekstrom TJ, Frank J, Vasanthakumar A, Godley LA, Michor F, Elemento O, Melnick A. Shaknovich R, et al. Among authors: de s. Blood. 2011 Sep 29;118(13):3559-69. doi: 10.1182/blood-2011-06-357996. Epub 2011 Aug 9. Blood. 2011. PMID: 21828137 Free PMC article.

3

Aberration in DNA methylation in B-cell lymphomas has a complex origin and increases with disease severity.

De S, Shaknovich R, Riester M, Elemento O, Geng H, Kormaksson M, Jiang Y, Woolcock B, Johnson N, Polo JM, Cerchietti L, Gascoyne RD, Melnick A, Michor F. De S, et al. PLoS Genet. 2013;9(1):e1003137. doi: 10.1371/journal.pgen.1003137. Epub 2013 Jan 10. PLoS Genet. 2013. PMID: 23326238 Free PMC article.

4

Copy neutral loss of heterozygosity is more frequent in older ovarian cancer patients.

Pedersen BS, Konstantinopoulos PA, Spillman MA, De S. Pedersen BS, et al. Among authors: de s. Genes Chromosomes Cancer. 2013 Sep;52(9):794-801. doi: 10.1002/gcc.22075. Epub 2013 May 28. Genes Chromosomes Cancer. 2013. PMID: 23716468 Free PMC article.

5

Loss of heterozygosity preferentially occurs in early replicating regions in cancer genomes.

Pedersen BS, De S. Pedersen BS, et al. Among authors: de s. Nucleic Acids Res. 2013 Sep;41(16):7615-24. doi: 10.1093/nar/gkt552. Epub 2013 Jun 22. Nucleic Acids Res. 2013. PMID: 23793816 Free PMC article.

6

The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment.

De S, Pedersen BS, Kechris K. De S, et al. Brief Bioinform. 2014 Nov;15(6):919-28. doi: 10.1093/bib/bbt053. Epub 2013 Aug 16. Brief Bioinform. 2014. PMID: 23956260 Free PMC article.

7

CruzDB: software for annotation of genomic intervals with UCSC genome-browser database.

Pedersen BS, Yang IV, De S. Pedersen BS, et al. Among authors: de s. Bioinformatics. 2013 Dec 1;29(23):3003-6. doi: 10.1093/bioinformatics/btt534. Epub 2013 Sep 12. Bioinformatics. 2013. PMID: 24037212 Free PMC article.

8

Variability in DNA methylation defines novel epigenetic subgroups of DLBCL associated with different clinical outcomes.

Chambwe N, Kormaksson M, Geng H, De S, Michor F, Johnson NA, Morin RD, Scott DW, Godley LA, Gascoyne RD, Melnick A, Campagne F, Shaknovich R. Chambwe N, et al. Among authors: de s. Blood. 2014 Mar 13;123(11):1699-708. doi: 10.1182/blood-2013-07-509885. Epub 2014 Jan 2. Blood. 2014. PMID: 24385541 Free PMC article.

9

An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples.

Yadav VK, De S. Yadav VK, et al. Among authors: de s. Brief Bioinform. 2015 Mar;16(2):232-41. doi: 10.1093/bib/bbu002. Epub 2014 Feb 20. Brief Bioinform. 2015. PMID: 24562872 Free PMC article. Review.

10

Patterns of somatically acquired amplifications and deletions in apparently normal tissues of ovarian cancer patients.

Aghili L, Foo J, DeGregori J, De S. Aghili L, et al. Among authors: de s. Cell Rep. 2014 May 22;7(4):1310-9. doi: 10.1016/j.celrep.2014.03.071. Epub 2014 May 1. Cell Rep. 2014. PMID: 24794429 Free PMC article.

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