Liwo A - Search Results

1

Molecular modeling of the binding modes of the iron-sulfur protein to the Jac1 co-chaperone from Saccharomyces cerevisiae by all-atom and coarse-grained approaches.

Mozolewska MA, Krupa P, Scheraga HA, Liwo A. Mozolewska MA, et al. Among authors: liwo a. Proteins. 2015 Aug;83(8):1414-26. doi: 10.1002/prot.24824. Epub 2015 Jun 6. Proteins. 2015. PMID: 25973573 Free PMC article.

2

Effects of compact volume and chain stiffness on the conformations of native proteins.

Hao MH, Rackovsky S, Liwo A, Pincus MR, Scheraga HA. Hao MH, et al. Among authors: liwo a. Proc Natl Acad Sci U S A. 1992 Jul 15;89(14):6614-8. doi: 10.1073/pnas.89.14.6614. Proc Natl Acad Sci U S A. 1992. PMID: 1631164 Free PMC article.

3

Calculation of protein backbone geometry from alpha-carbon coordinates based on peptide-group dipole alignment.

Liwo A, Pincus MR, Wawak RJ, Rackovsky S, Scheraga HA. Liwo A, et al. Protein Sci. 1993 Oct;2(10):1697-714. doi: 10.1002/pro.5560021015. Protein Sci. 1993. PMID: 7504550 Free PMC article.

4

Prediction of conformation of rat galanin in the presence and absence of water with the use of Monte Carlo methods and the ECEPP/3 force field.

Liwo A, Ołdziej S, Ciarkowski J, Kupryszewski G, Pincus MR, Wawak RJ, Rackovsky S, Scheraga HA. Liwo A, et al. J Protein Chem. 1994 May;13(4):375-80. doi: 10.1007/BF01901693. J Protein Chem. 1994. PMID: 7527217

5

Comparison of the low energy conformations of an oncogenic and a non-oncogenic p21 protein, neither of which binds GTP or GDP.

Liwo A, Gibson KD, Scheraga HA, Brandt-Rauf PW, Monaco R, Pincus MR. Liwo A, et al. J Protein Chem. 1994 Feb;13(2):237-51. doi: 10.1007/BF01891982. J Protein Chem. 1994. PMID: 8060496

6

Prediction of protein conformation on the basis of a search for compact structures: test on avian pancreatic polypeptide.

Liwo A, Pincus MR, Wawak RJ, Rackovsky S, Scheraga HA. Liwo A, et al. Protein Sci. 1993 Oct;2(10):1715-31. doi: 10.1002/pro.5560021016. Protein Sci. 1993. PMID: 8251944 Free PMC article.

7

Coupling between folding and ionization equilibria: effects of pH on the conformational preferences of polypeptides.

Ripoll DR, Vorobjev YN, Liwo A, Vila JA, Scheraga HA. Ripoll DR, et al. Among authors: liwo a. J Mol Biol. 1996 Dec 13;264(4):770-83. doi: 10.1006/jmbi.1996.0676. J Mol Biol. 1996. PMID: 8980685 Free article.

8

New developments of the electrostatically driven Monte Carlo method: test on the membrane-bound portion of melittin.

Ripoll DR, Liwo A, Scheraga HA. Ripoll DR, et al. Among authors: liwo a. Biopolymers. 1998 Aug;46(2):117-26. doi: 10.1002/(SICI)1097-0282(199808)46:2<117::AID-BIP6>3.0.CO;2-P. Biopolymers. 1998. PMID: 9664845

9

Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K.

Lee J, Liwo A, Scheraga HA. Lee J, et al. Among authors: liwo a. Proc Natl Acad Sci U S A. 1999 Mar 2;96(5):2025-30. doi: 10.1073/pnas.96.5.2025. Proc Natl Acad Sci U S A. 1999. PMID: 10051588 Free PMC article.

10

Protein structure prediction by global optimization of a potential energy function.

Liwo A, Lee J, Ripoll DR, Pillardy J, Scheraga HA. Liwo A, et al. Proc Natl Acad Sci U S A. 1999 May 11;96(10):5482-5. doi: 10.1073/pnas.96.10.5482. Proc Natl Acad Sci U S A. 1999. PMID: 10318909 Free PMC article.

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