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Conserved role of intragenic DNA methylation in regulating alternative promoters.
Maunakea AK, Nagarajan RP, Bilenky M, Ballinger TJ, D'Souza C, Fouse SD, Johnson BE, Hong C, Nielsen C, Zhao Y, Turecki G, Delaney A, Varhol R, Thiessen N, Shchors K, Heine VM, Rowitch DH, Xing X, Fiore C, Schillebeeckx M, Jones SJ, Haussler D, Marra MA, Hirst M, Wang T, Costello JF. Maunakea AK, et al. Among authors: costello jf. Nature. 2010 Jul 8;466(7303):253-7. doi: 10.1038/nature09165. Nature. 2010. PMID: 20613842 Free PMC article.
Genome-scale DNA methylation analysis.
Fouse SD, Nagarajan RO, Costello JF. Fouse SD, et al. Among authors: costello jf. Epigenomics. 2010 Feb;2(1):105-17. doi: 10.2217/epi.09.35. Epigenomics. 2010. PMID: 20657796 Free PMC article. Review.
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.
Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF. Harris RA, et al. Among authors: costello jf. Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19. Nat Biotechnol. 2010. PMID: 20852635 Free PMC article.
Genetic and epigenetic regulation of the organic cation transporter 3, SLC22A3.
Chen L, Hong C, Chen EC, Yee SW, Xu L, Almof EU, Wen C, Fujii K, Johns SJ, Stryke D, Ferrin TE, Simko J, Chen X, Costello JF, Giacomini KM. Chen L, et al. Among authors: costello jf. Pharmacogenomics J. 2013 Apr;13(2):110-20. doi: 10.1038/tpj.2011.60. Epub 2012 Jan 10. Pharmacogenomics J. 2013. PMID: 22231567 Free PMC article.
Methods for cancer epigenome analysis.
Nagarajan RP, Fouse SD, Bell RJ, Costello JF. Nagarajan RP, et al. Among authors: costello jf. Adv Exp Med Biol. 2013;754:313-38. doi: 10.1007/978-1-4419-9967-2_15. Adv Exp Med Biol. 2013. PMID: 22956508 Free PMC article. Review.
Cancer Stem Cells Activate STAT3 the EZ Way.
Fouse SD, Costello JF. Fouse SD, et al. Among authors: costello jf. Cancer Cell. 2013 Jun 10;23(6):711-3. doi: 10.1016/j.ccr.2013.05.016. Cancer Cell. 2013. PMID: 23763996 Free PMC article.
256 results