Rube HT - Search Results

1

Cancer. The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer.

Bell RJ, Rube HT, Kreig A, Mancini A, Fouse SD, Nagarajan RP, Choi S, Hong C, He D, Pekmezci M, Wiencke JK, Wrensch MR, Chang SM, Walsh KM, Myong S, Song JS, Costello JF. Bell RJ, et al. Among authors: rube ht. Science. 2015 May 29;348(6238):1036-9. doi: 10.1126/science.aab0015. Epub 2015 May 14. Science. 2015. PMID: 25977370 Free PMC article.

2

Understanding TERT Promoter Mutations: A Common Path to Immortality.

Bell RJ, Rube HT, Xavier-Magalhães A, Costa BM, Mancini A, Song JS, Costello JF. Bell RJ, et al. Among authors: rube ht. Mol Cancer Res. 2016 Apr;14(4):315-23. doi: 10.1158/1541-7786.MCR-16-0003. Epub 2016 Mar 3. Mol Cancer Res. 2016. PMID: 26941407 Free PMC article. Review.

3

Quantifying the role of steric constraints in nucleosome positioning.

Rube HT, Song JS. Rube HT, et al. Nucleic Acids Res. 2014 Feb;42(4):2147-58. doi: 10.1093/nar/gkt1239. Epub 2013 Nov 27. Nucleic Acids Res. 2014. PMID: 24288372 Free PMC article.

4

Categorical spectral analysis of periodicity in nucleosomal DNA.

Jin H, Rube HT, Song JS. Jin H, et al. Among authors: rube ht. Nucleic Acids Res. 2016 Mar 18;44(5):2047-57. doi: 10.1093/nar/gkw101. Epub 2016 Feb 17. Nucleic Acids Res. 2016. PMID: 26893354 Free PMC article.

5

Quantitative analysis and prediction of G-quadruplex forming sequences in double-stranded DNA.

Kim M, Kreig A, Lee CY, Rube HT, Calvert J, Song JS, Myong S. Kim M, et al. Among authors: rube ht. Nucleic Acids Res. 2016 Jun 2;44(10):4807-17. doi: 10.1093/nar/gkw272. Epub 2016 Apr 19. Nucleic Acids Res. 2016. PMID: 27095201 Free PMC article.

6

Sequence features accurately predict genome-wide MeCP2 binding in vivo.

Rube HT, Lee W, Hejna M, Chen H, Yasui DH, Hess JF, LaSalle JM, Song JS, Gong Q. Rube HT, et al. Nat Commun. 2016 Mar 24;7:11025. doi: 10.1038/ncomms11025. Nat Commun. 2016. PMID: 27008915 Free PMC article.

7

Measuring DNA mechanics on the genome scale.

Basu A, Bobrovnikov DG, Qureshi Z, Kayikcioglu T, Ngo TTM, Ranjan A, Eustermann S, Cieza B, Morgan MT, Hejna M, Rube HT, Hopfner KP, Wolberger C, Song JS, Ha T. Basu A, et al. Among authors: rube ht. Nature. 2021 Jan;589(7842):462-467. doi: 10.1038/s41586-020-03052-3. Epub 2020 Dec 16. Nature. 2021. PMID: 33328628 Free PMC article.

8

Prediction of protein-ligand binding affinity from sequencing data with interpretable machine learning.

Rube HT, Rastogi C, Feng S, Kribelbauer JF, Li A, Becerra B, Melo LAN, Do BV, Li X, Adam HH, Shah NH, Mann RS, Bussemaker HJ. Rube HT, et al. Nat Biotechnol. 2022 Oct;40(10):1520-1527. doi: 10.1038/s41587-022-01307-0. Epub 2022 May 23. Nat Biotechnol. 2022. PMID: 35606422 Free PMC article.

9

Context-Dependent Gene Regulation by Homeodomain Transcription Factor Complexes Revealed by Shape-Readout Deficient Proteins.

Kribelbauer JF, Loker RE, Feng S, Rastogi C, Abe N, Rube HT, Bussemaker HJ, Mann RS. Kribelbauer JF, et al. Among authors: rube ht. Mol Cell. 2020 Apr 2;78(1):152-167.e11. doi: 10.1016/j.molcel.2020.01.027. Epub 2020 Feb 12. Mol Cell. 2020. PMID: 32053778 Free PMC article.

10

A unified approach for quantifying and interpreting DNA shape readout by transcription factors.

Rube HT, Rastogi C, Kribelbauer JF, Bussemaker HJ. Rube HT, et al. Mol Syst Biol. 2018 Feb 22;14(2):e7902. doi: 10.15252/msb.20177902. Mol Syst Biol. 2018. PMID: 29472273 Free PMC article.

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