Thorne JL - Search Results

1

Roles of solvent accessibility and gene expression in modeling protein sequence evolution.

Wang K, Yu S, Ji X, Lakner C, Griffing A, Thorne JL. Wang K, et al. Among authors: thorne jl. Evol Bioinform Online. 2015 Apr 29;11:85-96. doi: 10.4137/EBO.S22911. eCollection 2015. Evol Bioinform Online. 2015. PMID: 25987828 Free PMC article.

2

The interface of protein structure, protein biophysics, and molecular evolution.

Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, Lakner C, Lartillot N, Lovell SC, Naylor G, Perica T, Pollock DD, Pupko T, Regan L, Roger A, Rubinstein N, Shakhnovich E, Sjölander K, Sunyaev S, Teufel AI, Thorne JL, Thornton JW, Weinreich DM, Whelan S. Liberles DA, et al. Among authors: thorne jl. Protein Sci. 2012 Jun;21(6):769-85. doi: 10.1002/pro.2071. Epub 2012 Apr 23. Protein Sci. 2012. PMID: 22528593 Free PMC article. Review.

3

A Phylogenetic Approach Finds Abundant Interlocus Gene Conversion in Yeast.

Ji X, Griffing A, Thorne JL. Ji X, et al. Among authors: thorne jl. Mol Biol Evol. 2016 Sep;33(9):2469-76. doi: 10.1093/molbev/msw114. Epub 2016 Jun 13. Mol Biol Evol. 2016. PMID: 27297467 Free PMC article.

4

Scalable Bayesian Divergence Time Estimation With Ratio Transformations.

Ji X, Fisher AA, Su S, Thorne JL, Potter B, Lemey P, Baele G, Suchard MA. Ji X, et al. Among authors: thorne jl. Syst Biol. 2023 Nov 1;72(5):1136-1153. doi: 10.1093/sysbio/syad039. Syst Biol. 2023. PMID: 37458991 Free PMC article.

5

Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization.

Yang Y, Xu T, Conant G, Kishino H, Thorne JL, Ji X. Yang Y, et al. Among authors: thorne jl. Mol Biol Evol. 2023 Sep 1;40(9):msad198. doi: 10.1093/molbev/msad198. Mol Biol Evol. 2023. PMID: 37675606 Free PMC article.

6

Combining protein evolution and secondary structure.

Thorne JL, Goldman N, Jones DT. Thorne JL, et al. Mol Biol Evol. 1996 May;13(5):666-73. doi: 10.1093/oxfordjournals.molbev.a025627. Mol Biol Evol. 1996. PMID: 8676741

7

Models of protein sequence evolution and their applications.

Thorne JL. Thorne JL. Curr Opin Genet Dev. 2000 Dec;10(6):602-5. doi: 10.1016/s0959-437x(00)00142-8. Curr Opin Genet Dev. 2000. PMID: 11088008 Review.

8

Protein evolution with dependence among codons due to tertiary structure.

Robinson DM, Jones DT, Kishino H, Goldman N, Thorne JL. Robinson DM, et al. Among authors: thorne jl. Mol Biol Evol. 2003 Oct;20(10):1692-704. doi: 10.1093/molbev/msg184. Epub 2003 Jul 28. Mol Biol Evol. 2003. PMID: 12885968

9

Dependence among sites in RNA evolution.

Yu J, Thorne JL. Yu J, et al. Among authors: thorne jl. Mol Biol Evol. 2006 Aug;23(8):1525-37. doi: 10.1093/molbev/msl015. Epub 2006 May 23. Mol Biol Evol. 2006. PMID: 16720696

10

Quantifying the impact of protein tertiary structure on molecular evolution.

Choi SC, Hobolth A, Robinson DM, Kishino H, Thorne JL. Choi SC, et al. Among authors: thorne jl. Mol Biol Evol. 2007 Aug;24(8):1769-82. doi: 10.1093/molbev/msm097. Epub 2007 May 23. Mol Biol Evol. 2007. PMID: 17522088

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